CX292392

Overview
NameCX292392
Unique NameCX292392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292392 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 73/155 (47.10%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  153 VAQNDAGSAAGLDLSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNP 617
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNP
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNP 162          
BLAST of CX292392 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 51/117 (43.59%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  267 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNP 617
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA +A  T T        N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   P
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAA-AAKATET-------INLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKP 220          
BLAST of CX292392 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  282 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNP 617
            LTIFYGG+V VFD   A+K +E++ +A   +  + T    + + N  A S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR+ SK P
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAP 227          
The following BLAST results are available for this feature:
BLAST of CX292392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TIF3B_ARATH1.840e-2947.10Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH3.152e-1343.59Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH2.259e-1139.47Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionC04015C01SK FlavFr1 Citrus clementina cDNA clone C04015C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292392 ID=CX292392; Name=CX292392; organism=Citrus clementina; type=EST; length=617bp
AAATTAAAAAAAATTGAAAAAAATCGAAGAAGAAGAGGAAGGAGTCTGGA
AATTTCTCGAGTTTAATTCAAATGGAGGAATTTGGGACTGTTGATGAAGT
GAAGCCGAAGGCTGAGGCCGGAATGGAAGTAGACGATAAGAAGAAGCATG
AGGTTGCGCAAAACGACGCCGGATCTGCTGCAGGGCTTGATTTGTCGGGG
AACGAGGTGTTTAACAACACCATCAGGGCCACGGCAATCCCAACTTCTGG
AGTGAATGCCACGGACCTTGCTCCAACTCAGCTTACGATCTTCTATGGTG
GAAAAGTGTGTGTATTTGATGCCATTCCGGCAGACAAGGTTCGTGAAATT
ATGCTTATTGCTGCCTCTTCTGCCACTGTTACTAACACAAGTGACATGAA
GAAGGACGATACCAACTGTCCTGCCTCTTCACCAGTTCTAACAAGGTCTC
CTTCACTGCAAAGCACTGCAAGTGCTTTGGCATCACCTCGGGCACAATCA
TATCCTGTTCAAAGGAATCTCCTCTGCAAATTGCAAGCTGAACTACCAAT
GGCAAGGAGGCATTCCCTTCAGCGATTTTTCGAGAAGCGACGTGACAGGC
TGGTGAGCAAGAATCCA
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