CX292394

Overview
NameCX292394
Unique NameCX292394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292394 vs. ExPASy Swiss-Prot
Match: ATG4_MEDTR (Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.548e-14
Identity = 51/152 (33.55%), Postives = 69/152 (45.39%), Query Frame = 2 
Query:  200 VMKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSET------------------------------------------AVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILIS 529
            V+K   ++  A+KC SKS+ +  + +     S+ GSS++                                          AV+++V+ GSMRR  ERVLG  RT +SSS  DIWLLGVCHKI+Q               F QDF SRILI+
Sbjct:    2 VLKDLCDRIVAAKCSSKSSTEIVDNTQVPASSKAGSSDSKFPKASLWSTFFTSGFSVDETYSESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDIRNVFAAFEQDFFSRILIT 153
[Close]
BLAST of CX292394 vs. ExPASy Swiss-Prot
Match: ATG4B_ARATH (Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:  332 VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILIS 529
            + +G++RR  +RVLGPSRTGISSSTS+IWLLGVC+KI++               F QDFSS IL++
Sbjct:   87 MASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFSSLILMT 152
The following BLAST results are available for this feature:
BLAST of CX292394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATG4_MEDTR3.548e-1433.55Cysteine protease ATG4 OS=Medicago truncatula GN=A... [more]
ATG4B_ARATH1.947e-1253.03Cysteine protease ATG4b OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04015C03SK FlavFr1 Citrus clementina cDNA clone C04015C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292394 ID=CX292394; Name=CX292394; organism=Citrus clementina; type=EST; length=530bp
TTTTTTTTTCATCGTTTATTCTCCTTTTTGTTTCCGGGTTTCGATATTTT
GCCTTGTACCAGAAAAAAAGGATTTCAATTTTCAAGTTCAAAATTCAAGG
AGAAGTTGAAACCAATCATTGATTCGTTTCGATAAATTTTTGTAAATTGG
GTTGCTTTCGTGAGCCCAATTTCGTGGCCTCATGTCGATGCATGACTAGG
TAATGAAGGGATTTCGTGAAAAGGCTGGTGCTTCAAAATGTTTTTCTAAA
AGTACACCTGATACACCAAACAGATCTTTGGCATCTGTTGGTTCAGAGCT
GGGATCTAGTGAGACAGCTGTGAAGAGACTAGTGACTGCTGGCTCAATGA
GGAGAATACATGAACGTGTACTAGGGCCGAGCAGGACTGGAATTTCTAGC
TCAACCAGTGACATATGGCTTCTTGGTGTGTGCCATAAAATTGCACAGGA
TGAGGCCTTGGGTGATGCAGCTGGTAACAATGGATTAGCGGAATTCAATC
AAGATTTTTCATCAAGAATTCTGATTTCAT
back to top