CX292403

Overview
NameCX292403
Unique NameCX292403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292403 vs. ExPASy Swiss-Prot
Match: PPO_MALDO (Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.044e-19
Identity = 51/95 (53.68%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  127 DNIEFERDARVKFDVYINEDEDGMPIGPDNSEFAGSFVNVPHKHKHGKKMKXXXXXXXXXXXXXXXXXXXXXVVVTLVPKFGKGLARIGGIKIDF 411
            + IEF+RD  VKFDVY+N D D +P GPD +EFAGSFV+VPH HKH KKM                      VVVTLVPKF  G  +IGGIKI+F
Sbjct:  500 EGIEFDRDVAVKFDVYVN-DVDDLPSGPDKTEFAGSFVSVPHSHKHKKKMNTILRLGLTDLLEEIEAEDDDSVVVTLVPKF--GAVKIGGIKIEF 591          
BLAST of CX292403 vs. ExPASy Swiss-Prot
Match: PPO_VITVI (Polyphenol oxidase, chloroplastic OS=Vitis vinifera PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 46/96 (47.92%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  133 IEFERDARVKFDVYINEDEDGMPIGPDNSEFAGSFVNVPHKHKHGKKMKXXXXXXXXXXXXXXXXXXXXXVVVTLVPKFGKGLARIGGIKIDFVKD 420
            IE +R+  VKFDVYIN DED     P NSEFAGSFVNVPHKH    K K                     V+VT+VP+ G     IGGI+I+FV D
Sbjct:  513 IELDRENFVKFDVYIN-DEDYSVSRPKNSEFAGSFVNVPHKHMKEMKTKTNLRFAINELLEDLGAEDDESVIVTIVPRAGGDDVTIGGIEIEFVSD 607          
BLAST of CX292403 vs. ExPASy Swiss-Prot
Match: PPO_VICFA (Polyphenol oxidase A1, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 47/141 (33.33%), Postives = 65/141 (46.10%), Query Frame = 1
Query:    1 RELIPRN--VFPIVLDRVISTXXXXXXXXXXXXXXXXXXXXXXXDNIEFERDARVKFDVYINEDEDGMPIGPDNSEFAGSFVNVPHK-HKH-GKKMKXXXXXXXXXXXXXXXXXXXXXVVVTLVPKFGKGLARIGGIKIDF 411
            R+  PR    FP+VL+  +S                        + IEF  +  +KFDVYIN+++D   +G  N+EFAGSFVN+PH  H H  KK+                      +VVTLVPK G G  +I  ++I F
Sbjct:  466 RQQSPRKYVTFPLVLNNKVSAIVKRPKKLRSKKEKEEEEEVLVIEGIEFYMNIAIKFDVYINDEDD--KVGAGNTEFAGSFVNIPHSAHGHKNKKIITSLRLGITDLLEDLHVEGDDNIVVTLVPKCGSGQVKINNVEIVF 604          
BLAST of CX292403 vs. ExPASy Swiss-Prot
Match: PPO1_IPOBA (Polyphenol oxidase I, chloroplastic OS=Ipomoea batatas GN=co-1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 39/129 (30.23%), Postives = 58/129 (44.96%), Query Frame = 1
Query:   19 NVFPIVLDRVISTXXXXXXXXXXXXXXXXXXXXXXXDNIEFERDARVKFDVYINEDEDGMPIGPDNSEFAGSFVNVPHKHKHGKKMKXXXXXXXXXXXXXXXXXXXXXVVVTLVPKFGKGLARIGGIKI 405
            +VFP+ LD+V+                           IE E D   KFDVY+N+ +D    G D +E+AGSF ++PHKHK  KK++                     ++VTL PK G G+  +  +K+
Sbjct:  365 SVFPVTLDKVVQVKVARPKKSRSAEEKEAEEEILLIVGIEVEIDKYAKFDVYLNDSDDPSG-GKDKAEYAGSFAHLPHKHKGMKKIRTTLSLGLNEPLEDLGAEDDDTILVTLAPKVGGGVVSVDNVKV 492          
BLAST of CX292403 vs. ExPASy Swiss-Prot
Match: PPO2_IPOBA (Polyphenol oxidase II, chloroplastic OS=Ipomoea batatas GN=co-2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 41/129 (31.78%), Postives = 56/129 (43.41%), Query Frame = 1
Query:   19 NVFPIVLDRVISTXXXXXXXXXXXXXXXXXXXXXXXDNIEFERDARVKFDVYINEDEDGMPIGPDNSEFAGSFVNVPHKHKHGKKMKXXXXXXXXXXXXXXXXXXXXXVVVTLVPKFGKGLARIGGIKI 405
            +VFP+ LD+V+                           IE   D   KFDVY+N DED    G + +E+AGSF ++PHKH   KK++                     V+VTL PK G G+  +  IKI
Sbjct:  457 DVFPLTLDKVVQVKVPRPKKSRSKEEKEAEEEILEIQGIEVAIDQYAKFDVYLN-DEDEPEAGKEKAEYAGSFAHLPHKHTGSKKIRTSLSLGLNEPLEDLGAEDDDAVLVTLAPKVGGGVVTVENIKI 584          
The following BLAST results are available for this feature:
BLAST of CX292403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PPO_MALDO2.044e-1953.68Polyphenol oxidase, chloroplastic OS=Malus domesti... [more]
PPO_VITVI2.586e-1447.92Polyphenol oxidase, chloroplastic OS=Vitis vinifer... [more]
PPO_VICFA7.043e-1233.33Polyphenol oxidase A1, chloroplastic OS=Vicia faba... [more]
PPO1_IPOBA1.201e-1130.23Polyphenol oxidase I, chloroplastic OS=Ipomoea bat... [more]
PPO2_IPOBA2.676e-1131.78Polyphenol oxidase II, chloroplastic OS=Ipomoea ba... [more]
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Properties
Property NameValue
Genbank descriptionC04015D01SK FlavFr1 Citrus clementina cDNA clone C04015D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292403 ID=CX292403; Name=CX292403; organism=Citrus clementina; type=EST; length=586bp
AGAGAGTTGATTCCGAGAAATGTATTTCCTATTGTCTTGGACAGAGTTAT
AAGCACTGTAGTTCCGCGGCCGAAGAAATCAAGGAGTAAAAAGGAAAAAG
AAGAGGAAGAGGAGGTGTTGGTTGTAGATAATATTGAGTTTGAGAGAGAT
GCGAGGGTGAAATTTGATGTGTACATAAATGAAGATGAAGATGGGATGCC
AATAGGGCCGGATAATAGTGAATTTGCGGGAAGCTTTGTGAATGTACCGC
ATAAGCATAAGCATGGCAAGAAGATGAAGACTAGTTTGAGATTGGGATTG
ACAGATTTGTTAGAGGATTTGGGAGCTGAGGATGATGATAGTGTGGTTGT
GACATTGGTGCCAAAATTTGGGAAGGGTCTAGCTCGCATTGGTGGCATCA
AGATTGATTTTGTTAAAGATTGATGAACGAGTATGGACCCATAATTATTT
CCAACAAGATATTGTGTGTTTCTTTTAGTCATTGTGGTTTCTTTGATTTT
TCTAGCCTCAAATGTTTCGTAAAAAGTCCAAACTCTACGTAATTCAGTTT
GGGATTCAGTGTATATTAATAAGATCTTTACACTGA
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