CX292404

Overview
NameCX292404
Unique NameCX292404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.146e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH 566
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH 140          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.391e-70
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH 566
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHH
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHH 140          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.629e-61
Identity = 122/140 (87.14%), Postives = 132/140 (94.29%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH 566
            M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEKQVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D H
Sbjct:    1 MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLH 140          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.198e-59
Identity = 116/140 (82.86%), Postives = 129/140 (92.14%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH 566
            MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEKQV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD H
Sbjct:    1 MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEKQVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVH 140          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.482e-59
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH 566
            MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK KQV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H
Sbjct:    1 MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAKQVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKH 140          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 3.008e-57
Identity = 112/138 (81.16%), Postives = 129/138 (93.48%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 560
            MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEKQ ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D
Sbjct:    1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREED 138          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.070e-54
Identity = 112/144 (77.78%), Postives = 127/144 (88.19%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 560
            MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEKQV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D
Sbjct:    1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREED 144          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.018e-53
Identity = 104/138 (75.36%), Postives = 127/138 (92.03%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 560
            MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK KQV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLKQVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMD 138          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE1_RAT (V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.041e-33
Identity = 69/138 (50.00%), Postives = 102/138 (73.91%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 560
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQD 140          
BLAST of CX292404 vs. ExPASy Swiss-Prot
Match: VATE1_MOUSE (V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.041e-33
Identity = 69/138 (50.00%), Postives = 102/138 (73.91%), Query Frame = 3
Query:  147 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 560
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQD 140          
The following BLAST results are available for this feature:
BLAST of CX292404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_CITUN2.146e-71100.00V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI1.391e-7099.29V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI2.629e-6187.14V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL4.198e-5982.86V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE_MESCR5.482e-5984.29V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE1_ARATH3.008e-5781.16V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE3_ARATH1.070e-5477.78V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE2_ARATH2.018e-5375.36V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE1_RAT1.041e-3350.00V-type proton ATPase subunit E 1 OS=Rattus norvegi... [more]
VATE1_MOUSE1.041e-3350.00V-type proton ATPase subunit E 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC04015D02SK FlavFr1 Citrus clementina cDNA clone C04015D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292404 ID=CX292404; Name=CX292404; organism=Citrus clementina; type=EST; length=567bp
CTCGTGCCGAATTCGGCACGAGGGGAAATCCCACCTGTTACTAACCTTAC
CCGTACCGTCTGTCTTTCCTTAGCGATCGAAGAAAGTCGAATCGCTCTTC
TCATTTTGATATCAACAATCTAATCAAATCAAAAGATCCCGCGAAAATGA
ACGACGCTGATGTTTCGAAGCAGATCCAGCAGATGGTGCGGTTTATCCGC
CAAGAAGCCGAAGAGAAAGCCAACGAGATCTCAGTTTCTGCCGAAGAAGA
ATTCAACATAGAGAAGTTGCAGCTGGTGGAAGCAGAGAAGAAGAAGATCA
GACAAGAGTACGAGCGGAAAGAGAAGCAAGTCGAAATCAGAAAGAAGATT
GAGTACTCCATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCA
GGATGATTTGGTCAGTAATATGATGGAGGCAGCATCAAAGGAGGTTTTGA
ATGTGAGTCGCGATCACAATTCATATAAGAAGCTTTTGAAGGGTCTTATT
GTTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTGTGTTACTGAGATGCCG
CAAAGATGACCATCATT
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