CX292405

Overview
NameCX292405
Unique NameCX292405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length382
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292405 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.793e-28
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 2 
Query:  104 IYSPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDET 283
            +Y  SEDEDVCPTCLEEYT ENPKIVTKCSHHFHL CIYEWMERSENCPVCGKVM F+ET
Sbjct:  171 MYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
The following BLAST results are available for this feature:
BLAST of CX292405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH6.793e-2888.33E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC04015D03SK FlavFr1 Citrus clementina cDNA clone C04015D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292405 ID=CX292405; Name=CX292405; organism=Citrus clementina; type=EST; length=382bp
AGACAAGTGGAATGATTCATCCTGTGAAGATGGATCGAAAGAACAACGTT
CTAAATCCTCAGTTACGCTTTCATCGGCAAAATCAACAGCTGGATTTGCG
TATATTTATTCTCCATCAGAAGATGAAGATGTCTGTCCAACATGTCTTGA
AGAATATACGCCAGAGAACCCCAAAATAGTGACAAAATGTTCTCACCATT
TCCACCTTGGTTGTATTTATGAATGGATGGAGAGAAGTGAAAACTGCCCT
GTCTGTGGCAAGGTGATGGTTTTTGATGAAACGACTTGATCTTTCAAAGG
TTTTGTTCGTGGATGGAACCAGCAACAACTGAAGAAAGAATGTTTAAATC
AAAGGAGACCTGTAAATCCATTTGTGAATATG
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