CX292406

Overview
NameCX292406
Unique NameCX292406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.618e-42
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 319
            MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP
Sbjct:    1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 82          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 3.618e-42
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 319
            MKFN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 82          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.345e-41
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 319
            MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTP
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 82          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.608e-27
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT 316
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEVNG+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGT 81          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG 313
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKG 80          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG 313
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKG 80          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG 313
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKG 80          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG 313
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKG 80          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRG 313
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKG 80          
BLAST of CX292406 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.747e-26
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 2
Query:   74 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT 316
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT
Sbjct:    1 MKLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVDGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGT 81          
The following BLAST results are available for this feature:
BLAST of CX292406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASPOF3.618e-4297.5640S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH3.618e-4296.3440S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH2.345e-4195.1240S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_ASHGO5.608e-2766.6740S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_RAT2.131e-2668.7540S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE2.131e-2668.7540S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA2.131e-2668.7540S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN2.131e-2668.7540S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN2.131e-2668.7540S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_KLUMA4.747e-2666.6740S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]

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Properties
Property NameValue
Genbank descriptionC04015D04SK FlavFr1 Citrus clementina cDNA clone C04015D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292406 ID=CX292406; Name=CX292406; organism=Citrus clementina; type=EST; length=321bp
AGAGAAGGAGTCGGAGTAGTACTAGAGCCGAAGCGCTTCTCATCTCTTTA
GCCACAGACTCTATCGAACAAAGATGAAGTTCAATATCGCAAATCCCACC
ACTGGGTGCCAGAAGAAGCTCGAAATTGACGATGACCAGAAACTTCGAGC
ATTTTTTGACAAGAGGATCTCTCAAGAAGTCAATGGAGATGCTCTTGGCG
AGGAGTTCAAGGGATATGTGTTCAAGATTATGGGTGGCTGCGACAAGCAA
GGTTTTCCCATGAAGCAAGGAGTGCTGACTCCCGGCCGTGTTCGTCTTTT
GCTCCACCGTGGTACCCCTTG
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