CX292407

Overview
NameCX292407
Unique NameCX292407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.963e-44
Identity = 96/131 (73.28%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPV 393
            EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF RLKTK+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE               VLNGSSG PESL + L +
Sbjct:  792 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.835e-43
Identity = 95/132 (71.97%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLA-DPLPV 393
            EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF+RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNGSSG P   A +P+PV
Sbjct:  792 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.465e-41
Identity = 93/132 (70.45%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPVV 396
            EELKQYFRPEFLNRL EMIVFRQLTKLEVKEIADIMLKEVF RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNG+SGAP   A P P++
Sbjct:  795 EELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.933e-40
Identity = 89/135 (65.93%), Postives = 97/135 (71.85%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAP----ESLADPLPV 393
            +ELKQYFRPEFLNRLDEMI+FRQLTKLEVKEIADI+L+E+F+RLK K++ELQ            GYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE              TVLNG SG P    E   D LPV
Sbjct:  739 QELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.235e-30
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNG 351
            EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK               TVL G
Sbjct:  698 EELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.613e-30
Identity = 66/97 (68.04%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 291
            EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK
Sbjct:  698 EELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.131e-30
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            EELKQYFRPEFLNRLDE+IVFRQLTK EV EIA+IMLKEVF R+  K I+L+            GYNP YGARPLRRA+MRLLED+++E+ LA +IKE
Sbjct:  695 EELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKE 792          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.046e-29
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            EELKQYFRPEFLNR+DE+IVFRQLTK EV++IA IML+E+F+R+K + I LQ            GYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE
Sbjct:  728 EELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.705e-22
Identity = 48/96 (50.00%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 288
            EELK++FRPEFLNR+DE+IVF  LTK ++ EI  +M+K++  RL+ K++ L+            GY+P YGARPLRRA+MRLLED++A++ L++ +
Sbjct:  729 EELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824          
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.186e-19
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    7 LKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294
            L+Q+FRPEFLNRLDE++VFR LTK ++++I +I L  +  RL  K I L+            GY+P +GARPLRR I R LE  +A+K+LA E+KE
Sbjct:  736 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831          
The following BLAST results are available for this feature:
BLAST of CX292407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
CLPC_PEA1.963e-4473.28ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC2.835e-4371.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC3.465e-4170.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA2.933e-4065.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE1.235e-3059.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU1.613e-3068.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH6.131e-3067.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.046e-2965.31ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_ODOSI4.705e-2250.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_THET82.186e-1950.00Chaperone protein clpB OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank descriptionC04015D05SK FlavFr1 Citrus clementina cDNA clone C04015D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292407 ID=CX292407; Name=CX292407; organism=Citrus clementina; type=EST; length=482bp
GAGGAATTGAAGCAGTACTTCAGGCCGGAGTTCTTGAATAGATTGGATGA
GATGATTGTTTTCCGACAACTCACCAAGCTGGAGGTTAAAGAGATTGCTG
ATATAATGCTGAAGGAGGTGTTTGATAGACTCAAGACAAAAGATATTGAG
CTTCAAGTGACAGAGAGATTTAGGGAGAGGGTGGTTGAGGAAGGTTATAA
CCCAAGCTATGGAGCAAGGCCATTGAGAAGAGCCATTATGAGACTTTTGG
AAGACAGCATGGCTGAGAAGATGCTTGCAAGAGAGATCAAAGAGGGTGAT
TCGGTCATTGTTGATGTCGATTCTGATGGGAACGTGACTGTGCTCAACGG
CAGCAGCGGTGCTCCAGAATCATTGGCAGATCCACTACCTGTTGTGTAAA
CTGATCATCTATTTTGAGATGTTTGTTGTACTTCCATTTTGATTTCAACT
GGCTAGATACTCAGTCTGGTTTCTTGGAAGGA
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