CX292407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.963e-44 Identity = 96/131 (73.28%), Postives = 99/131 (75.57%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPV 393 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF RLKTK+IELQ GYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE VLNGSSG PESL + L + Sbjct: 792 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 2.835e-43 Identity = 95/132 (71.97%), Postives = 99/132 (75.00%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLA-DPLPV 393 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF+RLK K+IELQ GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE TVLNGSSG P A +P+PV Sbjct: 792 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 3.465e-41 Identity = 93/132 (70.45%), Postives = 97/132 (73.48%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPVV 396 EELKQYFRPEFLNRL EMIVFRQLTKLEVKEIADIMLKEVF RLK K+IELQ GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE TVLNG+SGAP A P P++ Sbjct: 795 EELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 2.933e-40 Identity = 89/135 (65.93%), Postives = 97/135 (71.85%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAP----ESLADPLPV 393 +ELKQYFRPEFLNRLDEMI+FRQLTKLEVKEIADI+L+E+F+RLK K++ELQ GYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE TVLNG SG P E D LPV Sbjct: 739 QELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.235e-30 Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNG 351 EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK TVL G Sbjct: 698 EELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.613e-30 Identity = 66/97 (68.04%), Postives = 79/97 (81.44%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 291 EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK Sbjct: 698 EELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.131e-30 Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294 EELKQYFRPEFLNRLDE+IVFRQLTK EV EIA+IMLKEVF R+ K I+L+ GYNP YGARPLRRA+MRLLED+++E+ LA +IKE Sbjct: 695 EELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKE 792
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.046e-29 Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294 EELKQYFRPEFLNR+DE+IVFRQLTK EV++IA IML+E+F+R+K + I LQ GYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE Sbjct: 728 EELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.705e-22 Identity = 48/96 (50.00%), Postives = 71/96 (73.96%), Query Frame = 1 Query: 1 EELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 288 EELK++FRPEFLNR+DE+IVF LTK ++ EI +M+K++ RL+ K++ L+ GY+P YGARPLRRA+MRLLED++A++ L++ + Sbjct: 729 EELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824
BLAST of CX292407 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 2.186e-19 Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 7 LKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 294 L+Q+FRPEFLNRLDE++VFR LTK ++++I +I L + RL K I L+ GY+P +GARPLRR I R LE +A+K+LA E+KE Sbjct: 736 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831 The following BLAST results are available for this feature:
BLAST of CX292407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 161
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Sequences
The
following sequences are available for this feature:
EST sequence >CX292407 ID=CX292407; Name=CX292407; organism=Citrus clementina; type=EST; length=482bpback to top |