CX292408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1) HSP 1 Score: 360.147 bits (923), Expect = 4.874e-99 Identity = 164/203 (80.79%), Postives = 180/203 (88.67%), Query Frame = 2 Query: 2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610 Y H LP PLS+ +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+ I WY+KYLNNP GRV+TL VTLTLGWPLYLA NVSGRPYDRFACH+DPYGPIYSDRERLQI+ISDAG+LA++Y L+ L AKGL +V C+YG PLLVVNGFLVLIT LQHT Sbjct: 73 YFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT 275
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 350.517 bits (898), Expect = 3.862e-96 Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 2 Query: 2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610 Y LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+AI WY KYLNNPLGR++ LTV LGWPLYLAFNVSGRPYD FACHF P PIY+DRERLQI++SDAGILA+ + LY AA+G+ + C+YG PLL+VN FLVLIT LQHT Sbjct: 73 YFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHT 275
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 6.817e-93 Identity = 155/204 (75.98%), Postives = 173/204 (84.80%), Query Frame = 2 Query: 2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPY-DRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610 Y LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPK+K+ I WY KYLNNPLGR + LTV TLGWPLY AFNVSGRPY + FACHF P PIY+DRERLQI++SDAGILA+ Y LY AA+G+ + C+YG PLL+VN FLVLIT LQHT Sbjct: 73 YFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFTLGWPLYWAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHT 276
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 1.286e-91 Identity = 145/203 (71.43%), Postives = 170/203 (83.74%), Query Frame = 2 Query: 2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610 Y H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SHRRHHSNTGSLDRDEVFVPK K+ + W++KYLNNPLGR ++L VTLT+GWP+YLAFNVSGRPYD FA H+ PY PIYS+RERL I++SD + ++ YSLY + KGLV++ C+YG PLL+VNGFLV IT LQHT Sbjct: 77 YFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHT 279
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2) HSP 1 Score: 275.789 bits (704), Expect = 1.209e-73 Identity = 123/203 (60.59%), Postives = 153/203 (75.37%), Query Frame = 2 Query: 2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610 YI LP PL+YLAWP+YW Q ILTG+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSHR HH+NT SLD DEV++PK K + Y K LN+P GR++ + +T TLG+PLYL N+SG+ Y+RFA HFDP PI+ +RER Q+ +SD G+LA++Y + VAAKG +V CIYG P+L V F +IT L HT Sbjct: 66 YIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDLGLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHT 268
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 1.066e-45 Identity = 95/219 (43.38%), Postives = 127/219 (57.99%), Query Frame = 2 Query: 5 IHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610 I + +PL YLAWP YW +QG + TG+WV+AHECGH +FS + L++TVG ILHS LLVPY SW+ SH +HH TG + +D+VFVPK ++ +G K +L+ P+ + + + GWP YL N SG+ Y R+ HF Y PI+ R I ISD G+LA + +L L+ V Y P L VN +LVLIT LQHT Sbjct: 80 IDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHT 298
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.393e-45 Identity = 95/219 (43.38%), Postives = 127/219 (57.99%), Query Frame = 2 Query: 5 IHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610 I + +PL YLAWP YW +QG + TG+WV+AHECGH +FS + L++TVG ILHS LLVPY SW+ SH +HH TG + +D+VFVPK ++ +G K +L+ P+ + + + GWP YL N SG+ Y R+ HF Y PI+ R I ISD G+LA + +L L+ V Y P L VN +LVLIT LQHT Sbjct: 80 IDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHT 298
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30 Identity = 71/199 (35.68%), Postives = 107/199 (53.77%), Query Frame = 2 Query: 20 HPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP---KQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH 607 H S+L +P+YWA+QG + ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY W+ SH+ HH N G+++ DE +VP K +G+ K+L + + L +P+YL G+ HF+PY ++ ER + S M L L A G + +F IYG P L+ +L +T L H Sbjct: 71 HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPL-------LAYPMYLMKRSPGKS----GSHFNPYSDLFQPHERKYVVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPYLIFVMWLDFVTYLHH 258
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.117e-29 Identity = 72/194 (37.11%), Postives = 104/194 (53.61%), Query Frame = 2 Query: 29 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH 607 S+ WP+YWA QG + ++V+ H+CGH +FSD L+ VG ILHS +LVPY W+ SHR HH N G ++ DE +VP + Y K ++ R++ TV L L +PLYL + G+ HF+PY +++ ER I S M SL L G + V +YG P ++ +L +T L H Sbjct: 78 SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERV---YKKLPHST--RMLRYTVPLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHH 262
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.234e-27 Identity = 70/195 (35.90%), Postives = 102/195 (52.31%), Query Frame = 2 Query: 29 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLG-RVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH 607 S+ WP+YW QG + ++V+ H+CGH +FSD L+ VG ILHS +LVPY W+ SHR HH N G ++ DE +VP + Y N P R++ TV L L +P+YL + G+ HF+PY +++ ER I S M+ +L L V V +YG P ++ +L +T L H Sbjct: 75 SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKL------YKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVYLSFLVDPVTVLKVYGVPYIIFVMWLDAVTYLHH 259 The following BLAST results are available for this feature:
BLAST of CX292408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX292408 ID=CX292408; Name=CX292408; organism=Citrus clementina; type=EST; length=612bpback to top |