CX292408

Overview
NameCX292408
Unique NameCX292408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 4.874e-99
Identity = 164/203 (80.79%), Postives = 180/203 (88.67%), Query Frame = 2
Query:    2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610
            Y H LP PLS+    +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+ I WY+KYLNNP GRV+TL VTLTLGWPLYLA NVSGRPYDRFACH+DPYGPIYSDRERLQI+ISDAG+LA++Y L+ L  AKGL +V C+YG PLLVVNGFLVLIT LQHT
Sbjct:   73 YFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT 275          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 3.862e-96
Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 2
Query:    2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610
            Y   LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+AI WY KYLNNPLGR++ LTV   LGWPLYLAFNVSGRPYD FACHF P  PIY+DRERLQI++SDAGILA+ + LY   AA+G+  + C+YG PLL+VN FLVLIT LQHT
Sbjct:   73 YFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHT 275          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 6.817e-93
Identity = 155/204 (75.98%), Postives = 173/204 (84.80%), Query Frame = 2
Query:    2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPY-DRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610
            Y   LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPK+K+ I WY KYLNNPLGR + LTV  TLGWPLY AFNVSGRPY + FACHF P  PIY+DRERLQI++SDAGILA+ Y LY   AA+G+  + C+YG PLL+VN FLVLIT LQHT
Sbjct:   73 YFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFTLGWPLYWAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHT 276          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.286e-91
Identity = 145/203 (71.43%), Postives = 170/203 (83.74%), Query Frame = 2
Query:    2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610
            Y H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SHRRHHSNTGSLDRDEVFVPK K+ + W++KYLNNPLGR ++L VTLT+GWP+YLAFNVSGRPYD FA H+ PY PIYS+RERL I++SD  + ++ YSLY +   KGLV++ C+YG PLL+VNGFLV IT LQHT
Sbjct:   77 YFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHT 279          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.209e-73
Identity = 123/203 (60.59%), Postives = 153/203 (75.37%), Query Frame = 2
Query:    2 YIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610
            YI  LP PL+YLAWP+YW  Q  ILTG+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSHR HH+NT SLD DEV++PK K  +  Y K LN+P GR++ + +T TLG+PLYL  N+SG+ Y+RFA HFDP  PI+ +RER Q+ +SD G+LA++Y +   VAAKG  +V CIYG P+L V  F  +IT L HT
Sbjct:   66 YIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDLGLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHT 268          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.066e-45
Identity = 95/219 (43.38%), Postives = 127/219 (57.99%), Query Frame = 2
Query:    5 IHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610
            I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    I ISD G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT
Sbjct:   80 IDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHT 298          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.393e-45
Identity = 95/219 (43.38%), Postives = 127/219 (57.99%), Query Frame = 2
Query:    5 IHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT 610
            I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    I ISD G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT
Sbjct:   80 IDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHT 298          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 71/199 (35.68%), Postives = 107/199 (53.77%), Query Frame = 2
Query:   20 HPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP---KQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH 607
            H  S+L +P+YWA+QG +   ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY  W+ SH+ HH N G+++ DE +VP   K    +G+  K+L   +   +       L +P+YL     G+       HF+PY  ++   ER  +  S      M   L  L  A G + +F IYG P L+   +L  +T L H
Sbjct:   71 HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPL-------LAYPMYLMKRSPGKS----GSHFNPYSDLFQPHERKYVVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPYLIFVMWLDFVTYLHH 258          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.117e-29
Identity = 72/194 (37.11%), Postives = 104/194 (53.61%), Query Frame = 2
Query:   29 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH 607
            S+  WP+YWA QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP  +     Y K  ++   R++  TV L  L +PLYL +   G+       HF+PY  +++  ER  I  S      M  SL  L    G + V  +YG P ++   +L  +T L H
Sbjct:   78 SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERV---YKKLPHST--RMLRYTVPLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHH 262          
BLAST of CX292408 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.234e-27
Identity = 70/195 (35.90%), Postives = 102/195 (52.31%), Query Frame = 2
Query:   29 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLG-RVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH 607
            S+  WP+YW  QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP  +        Y N P   R++  TV L  L +P+YL +   G+       HF+PY  +++  ER  I  S      M+ +L  L      V V  +YG P ++   +L  +T L H
Sbjct:   75 SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKL------YKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVYLSFLVDPVTVLKVYGVPYIIFVMWLDAVTYLHH 259          
The following BLAST results are available for this feature:
BLAST of CX292408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
FD6E2_SOYBN4.874e-9980.79Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH3.862e-9677.34Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU6.817e-9375.98Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.286e-9171.43Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL1.209e-7360.59Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORAP1.066e-4543.38Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS1.393e-4543.38Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD3E_TOBAC8.203e-3035.68Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH3.117e-2937.11Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA2.234e-2735.90Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC04015D06SK FlavFr1 Citrus clementina cDNA clone C04015D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292408 ID=CX292408; Name=CX292408; organism=Citrus clementina; type=EST; length=612bp
TTACATTCACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTT
ACTGGGCTCTTCAAGGCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCAT
GAATGTGGCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGT
TGGCCTTATCCTCCACTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGT
ATAGCCATCGCCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAA
GTATTTGTCCCCAAGCAAAAAACCGCCATTGGTTGGTATGCCAAGTACCT
TAACAACCCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTG
GCTGGCCTTTGTACCTGGCATTCAATGTATCCGGTAGGCCTTATGATAGA
TTTGCTTGCCACTTTGATCCTTATGGCCCCATCTACTCAGACCGCGAGAG
GCTCCAAATTTTCATTTCTGATGCTGGAATTTTAGCTATGATTTACAGTC
TCTACTGTCTTGTAGCAGCAAAAGGACTTGTGTACGTGTTCTGCATCTAT
GGAGGACCTTTGCTGGTAGTGAACGGATTTCTCGTTTTGATCACATTGTT
GCAGCACACTTA
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