CX292412

Overview
NameCX292412
Unique NameCX292412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length359
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U4974_RICCO (UPF0497 membrane protein 4 OS=Ricinus communis GN=RCOM_0679870 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.193e-32
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 3
Query:   54 VRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            +R +YF +DVGLRV LFA TL +++VM+TAKQTEL   PG+P +RV V+AKF  SPAFIYFVAALSVACLYSIIT LASL V++KP  A + L Y+A WDV+M
Sbjct:   25 LRRDYFAVDVGLRVFLFATTLTAIVVMSTAKQTELAPVPGVPGLRVPVEAKFNHSPAFIYFVAALSVACLYSIITTLASLGVIAKPIYATKFLFYYALWDVLM 127          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U497F_VITVI (UPF0497 membrane protein 15 OS=Vitis vinifera GN=GSVIVT00019814001 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.748e-24
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   66 YFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            Y  +DV LR+LL  + + SV+VM T+ QT+L+   G+P+ VS KAKF +SPAFIYFVAALSV  LYSIIT LAS   +SKP+ + + +L+ A WDV+M
Sbjct:   39 YSALDVVLRILLLGSAVASVVVMVTSVQTKLIAVAGVPVLVSNKAKFQNSPAFIYFVAALSVVGLYSIITTLASFIFISKPSCSTKTILHLAIWDVLM 136          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U497C_SOYBN (UPF0497 membrane protein 12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.471e-22
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 3
Query:   63 NYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            +YF  DV LR LLFAA+LV+V+V+ TA QTE++    +P  V   AKF  SPAF+YFVAALSV  LYSIIT LASL   +KPA   +LLLYF  WD ++
Sbjct:   25 DYFKFDVILRFLLFAASLVAVVVIVTANQTEVIR---VPQPVPWPAKFRYSPAFVYFVAALSVTGLYSIITTLASLLASNKPALKTKLLLYFILWDALI 120          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U4972_MUSAC (UPF0497 membrane protein 2 OS=Musa acuminata GN=MA4_106O17.52 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.018e-21
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   63 NYFGIDVGLRVLLFAATLVSVIVMATAKQTELVT---PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            N FG+D GLR+LL A+ + +++V+ T+KQTE +    PP  P  +S  AKF  SPAFIY + ALSV C YSIITM+AS + ++ P+S+ R+L +    D VM
Sbjct:   19 NLFGVDFGLRLLLLASAVSALVVLVTSKQTESIPTSLPPPFPAFISRDAKFQHSPAFIYLLVALSVTCFYSIITMVASFAAITSPSSSPRMLFHLVLSDAVM 120          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U497D_SOYBN (UPF0497 membrane protein 13 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.865e-20
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   63 NYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            +YF  DV LR +LFAA+LV+V+V+ T  QTE++    +P  V   AKF  +PAF+YFVAALSV  LYSIIT LASL   +KPA   +LL YF  WD ++
Sbjct:   25 DYFKFDVILRFVLFAASLVAVVVIVTGNQTEVIL---VPQPVPWPAKFRYTPAFVYFVAALSVTGLYSIITTLASLFASNKPALKTKLLPYFILWDALI 120          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U497P_ARATH (UPF0497 membrane protein At4g15610 OS=Arabidopsis thaliana GN=At4g15610 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.183e-18
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   81 VGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            V LR +LFAATL S++VM T+KQT+ +  PG PIR+   A+FT+SPA IYFV ALSVAC YSI++   ++S   K + +  LLL  A  D VM
Sbjct:   31 VVLRFVLFAATLTSIVVMVTSKQTKNIFLPGTPIRIPA-AEFTNSPALIYFVVALSVACFYSIVSTFVTVSAFKKHSCSAVLLLNLAIMDAVM 122          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U497F_ARATH (UPF0497 membrane protein At3g06390 OS=Arabidopsis thaliana GN=At3g06390 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.183e-18
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 3
Query:   75 IDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            ID+  RVLLF+ATL ++IVM T+ QTE+   PG+     V A+F DSPAFIYFV AL VA  Y++I+ L S+S++ KP    +  +Y A  D+VM
Sbjct:   37 IDIITRVLLFSATLTALIVMVTSDQTEMTQLPGVSSPAPVSAEFNDSPAFIYFVVALVVASFYALISTLVSISLLLKPEFTAQFSIYLASLDMVM 131          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U497_IPONI (UPF0497 membrane protein In26 (Fragment) OS=Ipomoea nil GN=IN26 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.486e-16
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   57 RENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVT---PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASL-SVVSKPASAKRLLLYFAFWDVVM 359
            +E Y   +  LR+LL A+ +V+V+VM T+K+TEL++    P  P  + + AKFT SPAFIYFVA LSVA LY+II+ LAS  +++ KP     L+ +F   DVVM
Sbjct:   19 KEYYKVTEAILRLLLLASLVVAVVVMVTSKETELISVKLDPFPPFMLPLTAKFTQSPAFIYFVAGLSVAGLYTIISTLASFYNLLIKPGFCPALVSHFIILDVVM 123          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U4972_SORBI (UPF0497 membrane protein Sb02g009660 OS=Sorghum bicolor GN=Sb02g009660 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 3
Query:   57 RENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLL 332
            R ++ G D+ LR LLFA TL  +IV+ATAKQT  +  P IP + VS  AKF  SPA IY + A  V C YS++T L SL ++S  +  K L L
Sbjct:   30 RSSFSGADLALRALLFAVTLAGLIVLATAKQTVSIPVPEIPGLLVSRPAKFNHSPALIYLLVAQCVTCFYSLLTALTSLKLISGSSPTKTLFL 122          
BLAST of CX292412 vs. ExPASy Swiss-Prot
Match: U497_PANGI (UPF0497 membrane protein OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.465e-14
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  132 MATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVM 359
            M T KQTEL+  P  P ++   +KFTDSPAFIYFVAA SVA LYSIIT L S   + KP  AK+L+ +F   DV++
Sbjct:    1 MVTGKQTELIPIPFPPYQIPYSSKFTDSPAFIYFVAAFSVAGLYSIITSLLSGLALLKPGYAKQLVSHFVVVDVLL 76          
The following BLAST results are available for this feature:
BLAST of CX292412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
U4974_RICCO1.193e-3266.02UPF0497 membrane protein 4 OS=Ricinus communis GN=... [more]
U497F_VITVI7.748e-2455.10UPF0497 membrane protein 15 OS=Vitis vinifera GN=G... [more]
U497C_SOYBN9.471e-2257.58UPF0497 membrane protein 12 OS=Glycine max PE=2 SV... [more]
U4972_MUSAC8.018e-2148.04UPF0497 membrane protein 2 OS=Musa acuminata GN=MA... [more]
U497D_SOYBN8.865e-2053.54UPF0497 membrane protein 13 OS=Glycine max PE=2 SV... [more]
U497P_ARATH2.183e-1852.69UPF0497 membrane protein At4g15610 OS=Arabidopsis ... [more]
U497F_ARATH2.183e-1849.47UPF0497 membrane protein At3g06390 OS=Arabidopsis ... [more]
U497_IPONI3.486e-1647.62UPF0497 membrane protein In26 (Fragment) OS=Ipomoe... [more]
U4972_SORBI1.014e-1548.39UPF0497 membrane protein Sb02g009660 OS=Sorghum bi... [more]
U497_PANGI1.465e-1455.26UPF0497 membrane protein OS=Panax ginseng PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC04015D10SK FlavFr1 Citrus clementina cDNA clone C04015D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292412 ID=CX292412; Name=CX292412; organism=Citrus clementina; type=EST; length=359bp
AAACACATACTATGGCGTCTGAAGCTCCAGCGAAATATGAAGATCAAAGG
GCGGTGCGCGAAAACTATTTTGGCATCGATGTGGGTCTTAGAGTATTGCT
GTTTGCAGCAACGCTCGTTTCCGTAATCGTCATGGCTACCGCCAAGCAAA
CTGAGCTCGTAACCCCACCTGGGATTCCTATTAGAGTCAGCGTTAAAGCC
AAGTTTACCGATTCCCCGGCTTTCATATATTTTGTCGCGGCACTATCGGT
TGCTTGCCTATACAGTATCATCACAATGCTTGCATCACTTTCGGTGGTCT
CCAAGCCAGCTTCCGCAAAACGGCTGCTGCTCTATTTCGCATTCTGGGAC
GTGGTGATG
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