CX292415

Overview
NameCX292415
Unique NameCX292415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_ARATH (Xylose isomerase OS=Arabidopsis thaliana GN=XYLA PE=2 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 4.249e-88
Identity = 145/165 (87.88%), Postives = 159/165 (96.36%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            MEVTHYLGGENYVFWGGREGYQ+LLNTDMGRE+DH+A FFE+A AYKKKIGFKG LLIEPKPQEPTKHQYDWDAATAANFLRKYGLI++FKLNIECNHATLSGH+CHH++ETAR+NGLLGNIDANTGD Q GWDTDQFLTD+GEAT +M+SVIKNGG+APGGFNF
Sbjct:  215 MEVTHYLGGENYVFWGGREGYQTLLNTDMGRELDHLARFFEAAVAYKKKIGFKGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGHTCHHELETARINGLLGNIDANTGDAQTGWDTDQFLTDVGEATMVMMSVIKNGGIAPGGFNF 379
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_HORVU (Xylose isomerase OS=Hordeum vulgare GN=XYLA PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.370e-78
Identity = 129/165 (78.18%), Postives = 149/165 (90.30%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +EVTHYLGGENYVFWGGREGYQ+LLNTDM RE++H+ANF ++A  +KKKIGF G LLIEPKPQEPTKHQYDWD AT  +FL+K+GL  +FK+N+ECNHATLSGHSCHH++ETAR+N +LGNIDANTGDPQVGWDTD+FLTDI EAT IM SV+KN GLAPGGFNF
Sbjct:  217 LEVTHYLGGENYVFWGGREGYQTLLNTDMKRELEHLANFLQAAVNHKKKIGFNGTLLIEPKPQEPTKHQYDWDVATTFSFLQKFGLTGEFKINVECNHATLSGHSCHHELETARINDILGNIDANTGDPQVGWDTDEFLTDISEATLIMSSVVKNDGLAPGGFNF 381
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_RHOBA (Xylose isomerase OS=Rhodopirellula baltica GN=xylA PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.274e-57
Identity = 105/165 (63.64%), Postives = 123/165 (74.55%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +EVT  LGGENYVFWGGREGYQ+L NTDM RE+DH+A FF  A  Y K IGF G  LIEPKP+EPTKHQYD DAA   NFLR Y L + FKLNIE NHATL+GH+  H+++ A + G LG+IDANTGD  +GWDTDQF TD    T  ML ++K+GG+  GG NF
Sbjct:  173 LEVTKRLGGENYVFWGGREGYQNLYNTDMKRELDHLAKFFHMAVDYAKSIGFDGQFLIEPKPKEPTKHQYDSDAAACMNFLRAYDLDSHFKLNIETNHATLAGHTMMHELDYAGIQGGLGSIDANTGDLLLGWDTDQFPTDYYLTTQTMLMILKHGGIGTGGVNF 337
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA2_XANAC (Xylose isomerase 2 OS=Xanthomonas axonopodis pv. citri GN=xylA2 PE=3 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 3.878e-57
Identity = 106/165 (64.24%), Postives = 122/165 (73.94%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ T  LGGENYVFWGGREGY  L NT M RE D+MA F   A  Y + IGFKGN LIEPKP EP KHQYD+D+AT   FLR++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NF
Sbjct:  182 IDATVALGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIEPKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNF 346
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_XANC5 (Xylose isomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=xylA1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.065e-57
Identity = 106/165 (64.24%), Postives = 122/165 (73.94%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ T  LGGENYVFWGGREGY  L NT M RE D+MA F   A  Y + IGFKGN LIEPKP EP KHQYD+D+AT   FLR++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NF
Sbjct:  182 IDATVELGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRAIGFKGNFLIEPKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNF 346
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA2_XANCP (Xylose isomerase 2 OS=Xanthomonas campestris pv. campestris GN=xylA2 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.065e-57
Identity = 106/165 (64.24%), Postives = 122/165 (73.94%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ T  LGGENYVFWGGREGY  L NT M RE D+MA F   A  Y + IGFKGN LIEPKP EP KHQYD+D+AT   FLR++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NF
Sbjct:  182 IDATVELGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRAIGFKGNFLIEPKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNF 346
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA2_XANC8 (Xylose isomerase 2 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=xylA2 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.065e-57
Identity = 106/165 (64.24%), Postives = 122/165 (73.94%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ T  LGGENYVFWGGREGY  L NT M RE D+MA F   A  Y + IGFKGN LIEPKP EP KHQYD+D+AT   FLR++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NF
Sbjct:  182 IDATVELGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRAIGFKGNFLIEPKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNF 346
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_BACA2 (Xylose isomerase OS=Bacillus amyloliquefaciens (strain FZB42) GN=xylA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.474e-56
Identity = 99/165 (60.00%), Postives = 124/165 (75.15%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +E    LG ENYVFWGGREGY++LLNTD+  E+D+MA F   A  Y K+IG+ G  LIEPKP+EPT HQYD DAAT   FL++YGL N FKLN+E NHATL+GH+  H++  AR++GLLG++DAN GDP +GWDTD+F TD+  AT  M  ++KNGGL  GG NF
Sbjct:  180 LETAKELGAENYVFWGGREGYETLLNTDLKFELDNMARFMHMAVDYAKEIGYTGQFLIEPKPKEPTTHQYDTDAATTIAFLKQYGLDNHFKLNLEANHATLAGHTFEHELRMARVHGLLGSVDANQGDPLLGWDTDEFPTDLYSATLAMYEILKNGGLGSGGLNF 344
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_ANATD (Xylose isomerase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=xylA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.474e-56
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            +EVT  LGGENYVFWGGREGY++LLNTDMG E+D++A F   A  Y K+IGF G  LIEPKP+EPTKHQYD+D+A    FL+KY L   FKLNIE NHATL+GH  HH++  AR+N +LG+IDAN GD  +GWDTDQF TD+   T  M  VIK GG   GG NF
Sbjct:  173 LEVTKELGGENYVFWGGREGYETLLNTDMGLELDNLARFLHMAVEYAKEIGFDGQFLIEPKPKEPTKHQYDFDSAHVYGFLKKYDLDKYFKLNIEVNHATLAGHDFHHELRFARINNMLGSIDANMGDLLLGWDTDQFPTDVRLTTLAMYEVIKAGGFDKGGLNF 337
[Close]
BLAST of CX292415 vs. ExPASy Swiss-Prot
Match: XYLA_XANOM (Xylose isomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=xylA1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.925e-56
Identity = 105/165 (63.64%), Postives = 121/165 (73.33%), Query Frame = 2 
Query:   68 MEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNF 562
            ++ T  LGGENYVFWGGREGY  L NT M RE D+MA F   A  Y + IGF GN LIEPKP EP KHQYD+D+AT   FLR++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NF
Sbjct:  182 IDATVELGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFTGNFLIEPKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNF 346
The following BLAST results are available for this feature:
BLAST of CX292415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
XYLA_ARATH4.249e-8887.88Xylose isomerase OS=Arabidopsis thaliana GN=XYLA P... [more]
XYLA_HORVU1.370e-7878.18Xylose isomerase OS=Hordeum vulgare GN=XYLA PE=1 S... [more]
XYLA_RHOBA2.274e-5763.64Xylose isomerase OS=Rhodopirellula baltica GN=xylA... [more]
XYLA2_XANAC3.878e-5764.24Xylose isomerase 2 OS=Xanthomonas axonopodis pv. c... [more]
XYLA_XANC55.065e-5764.24Xylose isomerase OS=Xanthomonas campestris pv. ves... [more]
XYLA2_XANCP5.065e-5764.24Xylose isomerase 2 OS=Xanthomonas campestris pv. c... [more]
XYLA2_XANC85.065e-5764.24Xylose isomerase 2 OS=Xanthomonas campestris pv. c... [more]
XYLA_BACA21.474e-5660.00Xylose isomerase OS=Bacillus amyloliquefaciens (st... [more]
XYLA_ANATD1.474e-5662.42Xylose isomerase OS=Anaerocellum thermophilum (str... [more]
XYLA_XANOM1.925e-5663.64Xylose isomerase OS=Xanthomonas oryzae pv. oryzae ... [more]

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Properties
Property NameValue
Genbank descriptionC04015E01SK FlavFr1 Citrus clementina cDNA clone C04015E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292415 ID=CX292415; Name=CX292415; organism=Citrus clementina; type=EST; length=564bp
GCATGGTGCTGCAACTAGCTCTGAAGTGGCTGTATATGCTTATGCTGCTG
CTCAAGTCAAGAAAGCCATGGAGGTCACTCATTATTTAGGGGGAGAAAAT
TATGTATTTTGGGGTGGCCGTGAAGGTTATCAGTCTCTCCTGAACACAGA
CATGGGAAGAGAGATTGATCACATGGCAAATTTTTTTGAATCTGCTGCCG
CGTACAAGAAGAAGATTGGATTCAAAGGGAATCTGTTGATCGAACCAAAG
CCTCAAGAACCTACCAAACACCAGTATGACTGGGATGCAGCAACAGCAGC
TAATTTCTTGCGGAAATATGGCCTCATAAATGACTTTAAACTAAACATTG
AGTGTAACCATGCCACCCTATCTGGTCACAGCTGCCATCATGATATTGAA
ACTGCAAGACTCAATGGTCTGCTAGGAAACATCGATGCAAACACTGGTGA
CCCTCAAGTTGGTTGGGATACAGATCAATTCCTGACAGATATTGGAGAGG
CTACTTCGATTATGCTCAGTGTGATTAAAAATGGAGGTTTGGCACCTGGA
GGATTCAACTTTGA
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