CX292427

Overview
NameCX292427
Unique NameCX292427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5I_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSADYIIAPVKPATCSVAC 294
            NRQ I+P++F ALE+N QNHWNQ+VLNLT NVRK+ CEMDE L  +C  + +E+ +    AAE+RK  W RLE+AAS +P        V P   S+AC
Sbjct:  403 NRQAILPIMFTALEKNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHARFKEDEAKQCSAAEKRKEVWARLENAASMKPITGKTAVLVTPRATSIAC 500          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5Z_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAAS 231
            N +VI+P+VFPALERNT+ HWNQAV +LT NVRK+LCE+D+ L   C  K + E    +    +R+ TW+RLE  A+
Sbjct:  439 NHKVIMPIVFPALERNTRGHWNQAVQSLTINVRKVLCEIDQVLFDECLAKFQVEEVNKTEVKAKRERTWQRLEDLAT 515          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5B_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAAS 231
            NR VI+P+++P LE+N Q+HWNQAV  LT N++K+  EMD EL + C+R+ EE+ +      E+R+ TW+RL  AA+
Sbjct:  408 NRSVILPIIYPTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAAA 484          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5N_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLE 219
            NR+VI+P++FPALERN Q HWNQAV +LT NVRKI  ++D EL + C  K +E+ S  +    +R+ TW+RLE
Sbjct:  430 NRKVILPIIFPALERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECLAKFKEDESKAAETEAKREATWKRLE 502          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5T_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLE 219
            NR+VI+P++FPALERNTQ HWNQAV +LT NV+KI  ++D EL + C  K  E+ S  +    +R+ TW+RLE
Sbjct:  409 NRKVILPIIFPALERNTQKHWNQAVHSLTLNVQKIFNDIDAELFKDCLAKFREDESKEAEIGAKREATWKRLE 481          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5E_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAAS 231
            N+ VI P++F ALERN + HWNQAV  L++NVR++  EMD EL + C+++  E  +      E+R+LTW+RLE AAS
Sbjct:  417 NKDVIFPIIFEALERNMKGHWNQAVHGLSENVRRMFLEMDTELFEECEKQYLENEAKACELLEQRELTWKRLEEAAS 493          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5G_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLES-AASFQPSADYIIAP 264
            N +VI+P+VFPA+ERNT+ HWNQAV +LT NVRK++ E D+ L   C  K +E+ +  +    +R+ TW+ LE  AAS   S + ++ P
Sbjct:  418 NHKVIMPIVFPAMERNTRGHWNQAVQSLTLNVRKVMAETDQILFDECLAKFQEDEANETEVVAKREATWKLLEELAASKSVSNEAVLVP 506          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5A_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAASFQPSADYII 258
            NR VI+P++F +LE+N ++HWNQAV  L+ N++++  EMD EL + C+++ EE+ +      E+R+  W RL+ A   +   D +I
Sbjct:  408 NRGVILPIIFASLEKNIESHWNQAVHGLSANIKRMFMEMDPELFEECQQQYEEKQAKSKQVEEQRQNRWRRLDEAVEEREREDPMI 493          
BLAST of CX292427 vs. ExPASy Swiss-Prot
Match: 2A5D_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.459e-13
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 NRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLE 219
            N ++I+P+VFPALE+N  +HWNQAV NLT+NV K+L + + +L + C  K +E+        ++   TW +LE
Sbjct:  397 NSRIILPIVFPALEKNGSSHWNQAVKNLTENVLKVLSDTNPDLFEECLHKFQEDQQKAEDTKKKNGETWRQLE 469          
The following BLAST results are available for this feature:
BLAST of CX292427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
2A5I_ARATH1.227e-2352.04Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5Z_ARATH3.822e-1751.95Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5B_ARATH6.519e-1748.05Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5N_ARATH8.514e-1753.42Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5T_ARATH2.477e-1653.42Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5E_ARATH4.226e-1649.35Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5G_ARATH5.519e-1644.94Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5A_ARATH1.151e-1338.37Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5D_ARATH7.459e-1342.47Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
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Properties
Property NameValue
Genbank descriptionC04015F02SK FlavFr1 Citrus clementina cDNA clone C04015F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292427 ID=CX292427; Name=CX292427; organism=Citrus clementina; type=EST; length=557bp
AACCGACAGGTGATTATTCCTCTTGTCTTCCCAGCTCTCGAACGGAACAC
CCAGAATCACTGGAACCAAGCAGTACTTAACCTGACACAAAATGTAAGGA
AAATATTATGTGAAATGGATGAAGAGCTAGTGCAAGCCTGCAAAAGGAAA
TTAGAGGAGGAAAATTCCACATTGAGTGTGGCTGCAGAGAGGCGGAAACT
GACGTGGGAACGCCTGGAAAGTGCAGCTAGTTTCCAACCCTCTGCTGATT
ATATTATAGCTCCAGTGAAACCGGCCACATGCTCTGTTGCTTGCTAATTG
CTTCTTGAGCACCAAATATGGGAAATGAACCAACCATGTGTCTGGAGATT
CTGATTATTGCAGGAATTGAAGTTGGCTGTTGAATTTGGCCAGATTTAGG
ATGCCAATCCAATAGGGTTTCTGTATCTACACTAAGATGTTGTGTTAAGA
GTAGTTGCCTTGTGGTGCGGTGCTATAATGATATAGGTTTGGATTTCTCT
GATGGCACTTGTGTATTGATATGTCGTTTCATTTATCTAAAGCTCTGTTT
GATTTGC
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