CX292431

Overview
NameCX292431
Unique NameCX292431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH068_ARATH (Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.066e-52
Identity = 112/175 (64.00%), Postives = 121/175 (69.14%), Query Frame = 2
Query:    8 DRSSECNSTASGGAAKKARVXXXXXXXXXXXFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQ-----------HPLLNDNCMKRKGTS----DHQESQEEVKKSLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGG 487
            DRSSECNS   GG+  K +             KVRKEKLG RI ALHQLVSPFGKTDTASVL EAIGYIRFLQSQIEALS PY G++ S  MR QQH Q             L+ND CMKR+G S    D+Q + EE KK LRSRGLCLVP+SCTLQVGSDNGADYWAPALG  G
Sbjct:  232 DRSSECNSLEIGGSTNK-KPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGADYWAPALGSAG 405          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.268e-41
Identity = 98/170 (57.65%), Postives = 112/170 (65.88%), Query Frame = 2
Query:   17 SECNSTASGGAAKKARVXXXXXXXXXXXFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQH-----------PLLNDNCMKR---KGTSDHQES--QEEVKKSLRSRGLCLVPVSCTLQVGSDNGADYWAPALG 478
            SECNS+   G++   +             KVRKEKLG RI +LHQLVSPFGKTDTASVL EAIGYIRFL SQIEALSLPY G+     M   QH+Q             L+N+ CMKR     ++D+Q+S   EE  K LRSRGLCLVP+SCTLQVGSDNGADYWAPA G
Sbjct:  190 SECNSSEMIGSSFANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNM-MHQHAQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPNEEPMKDLRSRGLCLVPISCTLQVGSDNGADYWAPAFG 358          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH110_ARATH (Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.608e-28
Identity = 79/159 (49.69%), Postives = 90/159 (56.60%), Query Frame = 2
Query:   35 ASGGAAKKARVXXXXXXXXXXXFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQHPLLNDNCMKRKGTSDHQESQEEVKKSLRSRGLCLVPVSCTLQVGSDN-------GADYW--APALGGG 484
            A   A+KK RV           FKVRKEKLGDRI AL QLVSPFGKTDTASVL+EAIGYI+FLQSQIE LS+PY+ +S +   +  Q                 S  QE  EE  + LRSRGLCLVP+SC   V  D        G  +W   P  GGG
Sbjct:  312 AGENASKKPRVESRSSCPP---FKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPGKASQL---------------VSQSQEGDEEETRDLRSRGLCLVPLSCMTYVTGDGGDGGGGVGTGFWPTPPGFGGG 452          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 71/149 (47.65%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   47 AAKKARVXXXXXXXXXXXFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQHPLLNDNCMKRKGTSDHQESQEEVKKSLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGGLR 493
            AAKK RV           FKVRKE L D+IT+L QLVSPFGKTDTASVL EAI YI+FL  Q+  LS PY+   G++  +QQQ S             G S  Q+  E     LR  GLCLVP+S T  V ++  AD+W P  GG   R
Sbjct:  264 AAKKPRVTTPSPLPT---FKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYM-KQGASNQQQQQIS-------------GKSKSQDENE--NHELRGHGLCLVPISSTFPVANETTADFWTPTFGGNNFR 393          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH123_ARATH (Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 74/162 (45.68%), Postives = 84/162 (51.85%), Query Frame = 2
Query:   11 RSSECNSTASGG-----AAKKARVXXXXXXXXXXXFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQHPLLNDNCMKRKGTSDHQESQEEVKKSLRSRGLCLVPVSCTLQVGSDNGADYWAPALGG 481
            R S  N    GG     AAK+A+            FK RKEK+GDRI AL QLVSPFGKTD ASVL EAI YI+FL  Q+ ALS PY+ S  S   +Q  HS                   E +   +  LRSRGLCLVPVS T  V  D   D+W P  GG
Sbjct:  312 RDSSSNEVKRGGNDHQPAAKRAK---SEAASPSPAFK-RKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHS------------------TELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGG 451          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH113_ARATH (Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 64/126 (50.79%), Postives = 78/126 (61.90%), Query Frame = 2
Query:  104 KVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQHPLLNDNCMKRKGTSDHQESQEEVKKSLRSRGLCLVPVSCTLQVGSDNGADYWAPALGG 481
            KVRKE+LG+RI AL QLVSP+GKTD ASVL EA+GYI+FLQ QI+ L  PYL                  +N +      T D   + +   K LRSRGLCLVPVS T+ V + NGAD+W+PA  G
Sbjct:  154 KVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLCSPYL------------------INHSLDGGVVTGDVMAAMKA--KDLRSRGLCLVPVSSTVHVENSNGADFWSPATMG 259          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH114_ARATH (Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 60/114 (52.63%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  101 FKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQHPLLNDNCMKRKGTSDHQESQEEVKKSLRSRGLCLVPVSCTLQVGS 442
            FKVRKEKLGDRITAL QLVSPFGKTDTASVL EA+ YI+FLQ Q+  LS P   + GS  ++QQQ S     N   +  +G  +  E        L SRGLCL+P+S +  V +
Sbjct:  172 FKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNPEQNTIGS--VQQQQCS-----NKKSINTQGEVEEDECSPRRYVDLSSRGLCLMPISASYPVAA 278          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH103_ARATH (Transcription factor bHLH103 OS=Arabidopsis thaliana GN=BHLH103 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.240e-21
Identity = 61/112 (54.46%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  101 FKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQI--EALSLPYLGSSGSAAMRQ-QQHSQHPLLNDNCMKRKGTSDHQESQEEVKKSLRSRGLCLVPVSCT 427
            FKVRKEKLGDRITAL QLVSPFGKTDTASVL +AI YI+FLQ QI  +  + P+L S GS   +Q    S +   N NC  R              + LRSRGLCL+P+S T
Sbjct:  189 FKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSPHLNSIGSGEQKQWSDKSSNNTHNQNCSPR--------------QDLRSRGLCLMPISST 286          
BLAST of CX292431 vs. ExPASy Swiss-Prot
Match: BH111_ARATH (Transcription factor bHLH111 OS=Arabidopsis thaliana GN=BHLH111 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17
Identity = 57/126 (45.24%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  113 KEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSSGSAAMRQQQHSQHPLLNDNCMKRKGTSDHQESQEEVKK--SLRSRGLCLVPVSCTLQVGSDNGA-DYWAPALGG 481
            K KL D+IT L Q+VSPFGKTDTASVL EAI YI F Q Q++ LS PY                  + N +     G  D ++  +   K   LRSRGLCLVP+S T     DN A DYW P   G
Sbjct:  208 KAKLRDKITTLQQIVSPFGKTDTASVLQEAITYINFYQEQVKLLSTPY------------------MKNSSMKDPWGGWDREDHNKRGPKHLDLRSRGLCLVPISYTPIAYRDNSATDYWNPTYRG 315          
The following BLAST results are available for this feature:
BLAST of CX292431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BH068_ARATH6.066e-5264.00Transcription factor bHLH68 OS=Arabidopsis thalian... [more]
BH133_ARATH1.268e-4157.65Transcription factor bHLH133 OS=Arabidopsis thalia... [more]
BH110_ARATH1.608e-2849.69Transcription factor bHLH110 OS=Arabidopsis thalia... [more]
BH112_ARATH1.274e-2547.65Transcription factor bHLH112 OS=Arabidopsis thalia... [more]
BH123_ARATH2.838e-2545.68Transcription factor bHLH123 OS=Arabidopsis thalia... [more]
BH113_ARATH6.989e-2450.79Transcription factor bHLH113 OS=Arabidopsis thalia... [more]
BH114_ARATH1.903e-2152.63Transcription factor bHLH114 OS=Arabidopsis thalia... [more]
BH103_ARATH4.240e-2154.46Transcription factor bHLH103 OS=Arabidopsis thalia... [more]
BH111_ARATH2.178e-1745.24Transcription factor bHLH111 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC04015F06SK FlavFr1 Citrus clementina cDNA clone C04015F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292431 ID=CX292431; Name=CX292431; organism=Citrus clementina; type=EST; length=627bp
GCTGCAGGATCGATCTTCTGAGTGTAACAGCACTGCAAGTGGTGGGGCGG
CCAAGAAAGCTAGGGTTCAGTCGTCTTCTTCTTCTTCAACCCAATCAACC
TTCAAGGTGAGGAAAGAAAAACTTGGAGACCGAATCACAGCTCTTCATCA
GCTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCAGTCTTGTTAGAAG
CAATTGGGTACATTAGATTCCTGCAGAGTCAAATTGAGGCCCTCAGCTTG
CCGTACTTGGGCAGTAGTGGATCAGCAGCTATGAGGCAACAACAACACTC
CCAGCACCCTCTGTTGAATGACAACTGCATGAAGAGGAAAGGAACTTCTG
ATCATCAGGAATCACAAGAAGAAGTAAAGAAAAGCTTGAGGAGCAGAGGG
CTGTGTCTGGTTCCAGTATCATGCACGCTGCAAGTTGGGAGCGACAACGG
GGCAGATTATTGGGCACCGGCTCTCGGCGGGGGAGGTCTCCGGTAGATGG
ATGAATAGAGTTATTAACGGCAGCACACTTATATAGGCATTGAGAGGATG
AATCGATATAACATCATGAGCAGTCACTCTGCTAAAAATATAAGGCTGAT
TGCTCATGATGCTATACAAAATCTTTT
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