CX292443

Overview
NameCX292443
Unique NameCX292443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYGK 500
            FT+ EL   TN FS+AN +  GG+G V++G LP+GQV+A+K+ +  S QG  EF +E+E+LS   H+NVV L+GFC +  +++LVYEYI NGSL   L GK
Sbjct:  622 FTFEELSKCTNNFSDANDVGGGGYGQVYKGTLPNGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSLRDGLSGK 722          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  195 WFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVED----GKRLLVYEYICNGSLDSHLY 494
            WF   ELE ATN FS+ NF+  GGFG V++GVLPDG V+AVK+   +  QGD EF +EVE++S  +HRN+V L G  + D     +R LVY+Y+ NG+LD HL+
Sbjct:  282 WFKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIESEFQGDAEFRNEVEIISNLKHRNLVPLRGCSMVDDDSESQRYLVYDYMSNGNLDDHLF 385          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  189 PRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYGK 500
            P  FTY+EL+ AT  F  +N L EGGFG V++G L DG+ VAVK   + S QG  +F +E+  +S  QHRN+V L G C E   RLLVYEY+ NGSLD  L+G+
Sbjct:  678 PYTFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGE 781          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 48/98 (48.98%), Postives = 74/98 (75.51%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHL 491
            FTYAEL LAT+ F+ +  + +GG+G V++G L  G VVA+K+ +  S QG++EF +E+E+LS   HRN+V L+GFC E+G+++LVYEY+ NG+L  ++
Sbjct:  613 FTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNI 710          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  117 RNKPPGPPPLC-SICQHKAPVFGNPPRWFTYAE-LELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            +NK  G  PL  SI + +   F N      + E L+ AT+ FS  N L  GGFGSV++GV P GQ +AVK+    S QGD EF +E+ +L+  QHRN+V LIGFC++  +RLLVYE+I N SLD  ++
Sbjct:  319 KNKVLGKSPLSGSIAEDE---FSNTESLLVHFETLKTATDNFSSENELGRGGFGSVYKGVFPQGQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGEERLLVYEFIKNASLDQFIF 443          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  186 PPRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            P   FT  +++ AT+ F+  N + EGGFG+V +GVL DG+VVAVKQ    S QG++EF +E+  +SC QH N+V L GFCVE  + LL YEY+ N SL S L+
Sbjct:  665 PSGTFTLRQIKFATDDFNPTNKIGEGGFGAVFKGVLADGRVVAVKQLSSKSRQGNREFLNEIGAISCLQHPNLVKLHGFCVERAQLLLAYEYMENNSLSSALF 767          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  198 FTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLY 494
            F +  +E ATN+F E N L +GGFG V++G+ P G  VAVK+    S QG++EF +EV V++  QHRN+V L+GFC+E  +R+LVYE++ N SLD  ++
Sbjct:  339 FDFKAIEAATNKFCETNKLGQGGFGEVYKGIFPSGVQVAVKRLSKTSGQGEREFANEVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSLDYFIF 437          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  189 PRWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            P  FTY+EL+ AT  F  +N L EGGFG V++G L DG+VVAVK   + S QG  +F +E+  +S   HRN+V L G C E   R+LVYEY+ NGSLD  L+G
Sbjct:  679 PYIFTYSELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFG 781          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  192 RWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            RW+T  ELE ATN   E N + EGG+G V+RG+L DG  VAVK       Q ++EF  EVEV+   +H+N+V L+G+CVE   R+LVY+++ NG+L+  ++G
Sbjct:  140 RWYTLRELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHG 241          
BLAST of CX292443 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  192 RWFTYAELELATNRFSEANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGKRLLVYEYICNGSLDSHLYG 497
            R F + E+  ATN+F E++ L  GGFG V++G L DG  VAVK+    S QG  EF +E+E+LS  +HR++V LIG+C E  + +LVYEY+ NG L SHLYG
Sbjct:  496 RCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYG 597          
The following BLAST results are available for this feature:
BLAST of CX292443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
Y5977_ARATH1.495e-2351.49Probable leucine-rich repeat receptor-like protein... [more]
Y1105_ARATH1.953e-2351.92Probable receptor-like protein kinase At1g11050 OS... [more]
Y5614_ARATH5.682e-2351.92Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH1.266e-2248.98Probable LRR receptor-like serine/threonine-protei... [more]
CRK29_ARATH1.653e-2246.88Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
RKF1_ARATH2.159e-2250.49Probable LRR receptor-like serine/threonine-protei... [more]
CRK4_ARATH2.820e-2248.48Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
Y1561_ARATH3.683e-2251.46Probable LRR receptor-like serine/threonine-protei... [more]
Y1154_ARATH4.810e-2247.06Probable serine/threonine-protein kinase At1g01540... [more]
THE1_ARATH4.810e-2250.98Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC04015G08SK FlavFr1 Citrus clementina cDNA clone C04015G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292443 ID=CX292443; Name=CX292443; organism=Citrus clementina; type=EST; length=542bp
ATGAATTCCTGTTGGAGAAATTATCAACATTGAATCGAGAGCCTGATATC
GGAGTGCTGAATTATAAGCTTGATCTGAAAATAAGTAAAAGTGTGAGAGA
GGCAGTTTCATTATCCAGGAATAAACCTCCAGGTCCTCCTCCATTGTGTT
CAATATGTCAGCACAAGGCACCTGTATTTGGTAATCCTCCGAGGTGGTTC
ACCTATGCTGAATTGGAGCTTGCTACAAATAGATTTTCAGAAGCAAATTT
CTTGGCTGAAGGTGGATTTGGTTCTGTTCACCGAGGTGTTCTACCAGATG
GCCAGGTTGTTGCCGTCAAGCAATATAAATTGGCTAGTTCTCAAGGTGAT
CAAGAATTTTGCTCAGAAGTTGAGGTTTTAAGTTGTGCACAACATCGCAA
TGTTGTGATGTTGATTGGATTCTGTGTGGAGGATGGGAAGAGATTGCTGG
TTTATGAGTATATTTGCAATGGGTCCTTGGATTCCCATCTTTATGGTAAA
TTCAACTTTATCCTAAATGGTTTTATAATTTACACTAACGTT
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