CX292449

Overview
NameCX292449
Unique NameCX292449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 3.858e-68
Identity = 121/152 (79.61%), Postives = 140/152 (92.11%), Query Frame = 2
Query:    5 ADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFML 460
            ADRDNSG IDDKELQGALSSYNQSFS+RTV LLMY FTN+N RKIGPKEF  +F SLQNWR++FE+ D+DRSG+ID+NELR+ALMSLGF+VSPV+LDLLV++FDK+GG+++AIEYDNFIECCLTVKGLTEKFKE+DT  SGSA F YENFML
Sbjct:  176 ADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTALSGSAIFNYENFML 327          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 2.117e-66
Identity = 119/152 (78.29%), Postives = 139/152 (91.45%), Query Frame = 2
Query:    5 ADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFML 460
            AD+D SG IDDKELQGALSSY Q FS+RTV LLMY FTN+NA KIGPKEF  +F+SLQNWR++FE+ D+DRSG+ID NELR+AL+SLGF+VSPVVLDLLV++FDK+GGK++AIEYDNFIECCLTVKGLTEKFKE+DT YSGSATF YE+FML
Sbjct:  195 ADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVLDLLVSKFDKSGGKNRAIEYDNFIECCLTVKGLTEKFKEKDTAYSGSATFNYESFML 346          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 69/155 (44.52%), Postives = 106/155 (68.39%), Query Frame = 2
Query:    5 ADRDNSGLIDDKELQGALS-SYNQSFSLRTVRLLM--YTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFML 460
            ADR+ SG +++ EL+ ALS S     S RT+RLL+  Y     +  ++GPKE++++++ L  WRA+F + DRDRSGK++S +LR+A  +LG  +   V  L+V++FD   GK+  + +D+F+EC + VKGLTEKF+E D  Y+G AT +Y+ FML
Sbjct:   64 ADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLGCVLPTSVHQLIVSQFDDGTGKTVDLCFDSFLECGMIVKGLTEKFRENDPGYTGYATLSYDVFML 218          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.832e-24
Identity = 55/151 (36.42%), Postives = 94/151 (62.25%), Query Frame = 2
Query:    8 DRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            D D SG I+ KEL+ AL ++N S F+  T  +++  F  T + ++    F  ++  LQ WRA F++ DRDRSG I++NE+ +AL  +G+ +SP  +  LV R+   GG +  ++ D FI+ C  ++ +T+ F+E+DT  +G+   +YE+F+
Sbjct:  113 DSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQMGYNLSPQFIQELVNRYSVRGG-TGVLQLDRFIQVCTQLQSMTQAFREKDTGMTGNVRMSYEDFL 262          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.200e-22
Identity = 53/151 (35.10%), Postives = 93/151 (61.59%), Query Frame = 2
Query:    8 DRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            D D+SG I  KEL+ AL + N  SF+  T  ++M  F  +N+ +I    F  ++  +Q WR +F++ DRDRSG I+  EL +AL  +G+ +SP  + ++++R+ +   +   ++ D FI+ C  ++ +TE F+E+DT   G+A  +YE+F+
Sbjct:  126 DTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMFDKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQMGYQLSPQFVQIVMSRYAQRSAQ-PGLQLDRFIQICTQLQSMTEAFREKDTGQIGTAKLSYEDFI 275          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: SORCN_SCHJA (Sorcin OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.709e-21
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 2
Query:    8 DRDNSGLIDDKELQGALSS-YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            D D SG I   ELQ +LS+      ++RTV+L++  F       I   EF+ +F  +Q+W+  F + DRD SG ID NE   AL+S G+ +SP  ++L++ RFD+  G   +I +D+FI  C+ ++ LT +F   D    G   F++E F+
Sbjct:   16 DADKSGSISANELQTSLSNGLGTPLNIRTVQLMVAMFDRDMNGTINFNEFLGLFKYVQDWQTCFRRYDRDNSGSIDLNEFSNALISFGYHLSPQFVNLMMRRFDRNRG---SIAFDDFIYACVCLQTLTREFSRYDCRGIGHTVFSFEQFL 163          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.709e-21
Identity = 57/151 (37.75%), Postives = 90/151 (59.60%), Query Frame = 2
Query:    8 DRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  LQ WR +F++ DRDRSG I S EL++AL  +G+ +SP    LLV+R+        A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  118 DADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCARSA-IPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 267          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: PDCD6_MOUSE (Programmed cell death protein 6 OS=Mus musculus GN=Pdcd6 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.538e-21
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 2
Query:    8 DRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            D+D SG+I D ELQ ALS+   + F+  TVR ++  F   N   +   EF  V+  + +W+ +F   DRD SG ID NEL++AL   G+ +S    D+L+ +FD+ G     I +D+FI+ C+ ++ LT+ F+  DT   G    +YE ++
Sbjct:   36 DKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 184          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: PDCD6_HUMAN (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.621e-21
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 2
Query:    8 DRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            D+D SG+I D ELQ ALS+   + F+  TVR ++  F   N   +   EF  V+  + +W+ +F   DRD SG ID NEL++AL   G+ +S    D+L+ +FD+ G     I +D+FI+ C+ ++ LT+ F+  DT   G    +YE ++
Sbjct:   36 DKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 184          
BLAST of CX292449 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = 2
Query:    8 DRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTRFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 457
            D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  +Q W+ +F++ DRDRSG I   EL++AL  +G+ +SP    LLV+R+      + A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  127 DSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSA-NPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 276          
The following BLAST results are available for this feature:
BLAST of CX292449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CML49_ARATH3.858e-6879.61Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH2.117e-6678.29Probable calcium-binding protein CML50 OS=Arabidop... [more]
CML48_ARATH2.888e-3144.52Probable calcium-binding protein CML48 OS=Arabidop... [more]
PEF1_DANRE5.832e-2436.42Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
PEF1_XENLA3.200e-2235.10Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
SORCN_SCHJA2.709e-2136.42Sorcin OS=Schistosoma japonicum PE=2 SV=1[more]
PEF1_MOUSE2.709e-2137.75Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PDCD6_MOUSE3.538e-2136.42Programmed cell death protein 6 OS=Mus musculus GN... [more]
PDCD6_HUMAN4.621e-2136.42Programmed cell death protein 6 OS=Homo sapiens GN... [more]
PEF1_HUMAN7.882e-2135.76Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC04015H03SK FlavFr1 Citrus clementina cDNA clone C04015H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292449 ID=CX292449; Name=CX292449; organism=Citrus clementina; type=EST; length=461bp
GTTGGCCGACCGGGACAACAGCGGCCTCATCGACGATAAGGAGTTGCAAG
GAGCCTTGTCTTCTTACAATCAGAGCTTCAGCTTGAGAACCGTTCGTCTG
CTTATGTACACATTCACCAACACTAACGCGAGAAAAATCGGGCCTAAGGA
GTTCATCCAAGTGTTTCACAGTCTTCAAAACTGGAGGGCCATGTTTGAGA
AAGTGGACAGGGACAGGAGTGGAAAGATTGATTCGAATGAGTTGCGGGAG
GCTCTTATGAGTCTAGGTTTTGCGGTTTCACCCGTGGTATTGGACTTGCT
TGTCACTAGGTTTGACAAAACTGGTGGCAAAAGCAAGGCCATTGAATATG
ATAACTTCATCGAGTGCTGTCTCACGGTTAAGGGGTTAACGGAGAAATTT
AAGGAGAGGGATACTACGTACTCTGGATCTGCAACTTTCACTTACGAGAA
TTTCATGCTGG
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