CX292452

Overview
NameCX292452
Unique NameCX292452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.122e-51
Identity = 107/189 (56.61%), Postives = 130/189 (68.78%), Query Frame = 2
Query:   59 LKRFMATAAND-EKKQDREVAVTEKXXXXXXXXXXXXXXXXXNND------IPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG--XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDV 598
            L RFMAT+A + E K + EV+V+EK                  N        P L EFFP  +GN L+QATEN+NRIF+N N  P QLMG+VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG                WS++SYGYYNTSL+LPDDAK ++IKAELKNGVLN+VIPRTEKPK++V
Sbjct:   38 LNRFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNV 226          
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  233 ALMQATENINRIFENLNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 580
            ++ Q  + ++R+FE+    P + +G         +K+++   ++R+D+PGL K+DVK+++ D +L IKG              WS+R+Y  Y+T L LPD+ + D++KAELKNGVL I IP+T+
Sbjct:   48 SMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTK 170          
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS23M_ORYSJ (23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  200 LAEFFP----SGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG----XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDV 598
            L +F P     G+G+AL Q  E + R           L G+V+E ++ Y+LR++VPGLGKDDV++ + DGVL I G                  W+A +   Y+  L LP+DA A+ I AE+++GVL++ +PR+ + K+ V
Sbjct:   86 LRDFVPLRLVDGIGSALSQVAETLTR----------PLTGKVREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAAT---YHAGLLLPEDAVAEGITAEVRDGVLHVTVPRSPERKRSV 213          
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.697e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  311 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 580
            +KE++   K+R+D+PGL K+DVKI++ D VL IKG              WS RS   Y T L LPD+ + D+IKAELKNGVL I IP+T+
Sbjct:  131 IKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDS----WSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTK 216          
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.448e-16
Identity = 43/124 (34.68%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  233 ALMQATENINRIFENLNFTPSQLMG--------RVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 580
            ++ Q  + ++RIFE+    P + +G         +K+++   ++R+D+PG+ K+DVK+++ D VL IK               WS +SY  Y+T L LPD+ + +++KAELK+GVL I IP+T+
Sbjct:  101 SMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDC---WSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTK 221          
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 47/128 (36.72%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  236 LMQATENINRIFEN-LNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQ 592
            + Q  + ++R+FE+ + F  S+  G         +K+ ++  K+R+D+PGL K++VK+++ D VL IKG              W  R+Y  Y+T L+LPD+   D++KAELKNGVL I IP+T+  K+
Sbjct:  110 MRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDS--WG-RNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKK 234          
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-14
Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  188 DIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGR----------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQ 592
            D+       P      + Q  + ++R+FE+    P +              + + ++  K+R+D+PGL K+DVK+++ + +L IKG              W  R+Y  Y+T L+LPD+   D+IKAELKNGVL I IP+TE  K+
Sbjct:   86 DVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHS-WG-RNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKK 228          
BLAST of CX292452 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.649e-12
Identity = 40/130 (30.77%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  236 LMQATENINRIFENLNF----TPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXX---WSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 580
            + Q  + ++RIF+++      TP + +          V E D   ++R+D+PGL +++VK+ + D  L I+G                 W  RS   Y+  LALPD+    +++AELKNGVL + +P+TE
Sbjct:  100 MRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTE 229          
The following BLAST results are available for this feature:
BLAST of CX292452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
HS26M_ARATH2.122e-5156.6126.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22C_SOYBN1.535e-1736.29Small heat shock protein, chloroplastic (Fragment)... [more]
HS23M_ORYSJ7.617e-1736.1723.6 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH1.697e-1648.8925.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA6.448e-1634.68Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_PETHY4.180e-1536.72Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC6.036e-1432.41Small heat shock protein, chloroplastic OS=Solanum... [more]
HS26P_ORYSJ5.649e-1230.7726.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionC04015H06SK FlavFr1 Citrus clementina cDNA clone C04015H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292452 ID=CX292452; Name=CX292452; organism=Citrus clementina; type=EST; length=599bp
TGAGAGAAGTGCTAGTACCATCGGTGGTGTACAAAGGCAAAAGTGGAGTA
ATGAGTTGTTGAAGAGGTTCATGGCAACAGCTGCCAATGATGAGAAAAAA
CAAGACAGAGAAGTCGCCGTGACTGAAAAAAGATCAAGGCTCTTTCCAAG
GAGAAGAGGCAGGAGGGGGAGTCTTTGGAGGAACAATGACATTCCCGTAC
TTGCTGAGTTCTTTCCTTCAGGGCTTGGAAATGCACTCATGCAAGCAACC
GAAAACATTAACAGGATATTCGAAAACTTGAACTTCACACCATCACAACT
CATGGGGCGGGTGAAAGAGCAAGACGACTGCTACAAGCTGCGGTATGACG
TTCCGGGCCTAGGCAAAGATGATGTGAAGATCACCATTCATGATGGGGTT
CTGACAATAAAGGGTGAGCACAAGGAAGAGGAAGAGGAAAGCTCTGACGA
CGAACACTGGTCAGCAAGGAGCTATGGTTACTACAACACAAGCCTCGCGC
TGCCTGATGATGCGAAGGCTGACGAGATTAAGGCCGAGTTGAAAAACGGG
GTTCTTAATATTGTAATTCCTAGGACCGAAAAGCCTAAGCAGGATGTGA
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