CX292456

Overview
NameCX292456
Unique NameCX292456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292456 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.878e-41
Identity = 78/122 (63.93%), Postives = 101/122 (82.79%), Query Frame = 3
Query:    3 EIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTKVLDMSSMPIDEPSIKVEQENMSK 368
            EIRN LL  LSKLQHAPSV FQERPPD+E PE DEDQEDGD+RWDPDSDMDVDD+RK +P+RVKREAVEP+ KD++GLKG+ E+ +G ++  D+S STKV  ++ + ++E S+K+E+E  +K
Sbjct:  369 EIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDPDSDMDVDDDRKPIPSRVKREAVEPDTKDKDGLKGIMERGKGCEVEVDESGSTKVTGVNPVGVEEASVKMEEEGTNK 490          
BLAST of CX292456 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21
Identity = 64/134 (47.76%), Postives = 87/134 (64.93%), Query Frame = 3
Query:    3 EIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDD--------ERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTK---VLDMSSMPIDEPS-IKVEQENMSK 368
            +IR+KL    SKL+HAPSV FQER PD+E+PE DEDQ+D DER DPDSDM+VDD         R  L  ++KRE  E   + ++G + +A + RG + +A+D  S+K     D S+M IDEPS +K E E+ +K
Sbjct:  374 DIRSKL----SKLRHAPSVHFQERVPDTEIPEQDEDQDDPDERHDPDSDMEVDDHKAVEESSRRSILGIKIKREFGENATRVQDGGR-VASEHRGLEPMAEDIGSSKQAPQADASAMAIDEPSNVKNEPESSTK 502          
The following BLAST results are available for this feature:
BLAST of CX292456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HDA19_ARATH1.878e-4163.93Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE6.279e-2147.76Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionC04015H11SK FlavFr1 Citrus clementina cDNA clone C04015H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292456 ID=CX292456; Name=CX292456; organism=Citrus clementina; type=EST; length=584bp
AGGAAATAAGGAATAAGCTTCTCGAATATCTCTCAAAGCTTCAACATGCA
CCCAGTGTCCAGTTTCAGGAAAGACCACCTGATTCTGAACTTCCAGAGGC
GGATGAAGATCAGGAGGATGGCGATGAGAGATGGGATCCAGATTCTGACA
TGGATGTTGATGATGAACGAAAGTCCCTACCAAACAGAGTTAAGAGAGAA
GCAGTTGAACCTGAGCAAAAAGATCGGGAGGGCCTTAAAGGAATGGCCGA
GCAAGCTAGAGGCTTCGACATGATTGCAGACGATTCTATAAGCACAAAGG
TTTTAGATATGAGTTCAATGCCAATTGATGAACCGAGCATCAAAGTTGAA
CAAGAAAACATGAGCAAGGCATCTGATCACATGTACCCGCATTCGTAACT
AAACTTTATCTCAGCATCGACATCTGCTATACGAATTATGTGTTTTAGAC
ATGAAAACCTGATTGGTTGTTCCAAACATCGCTTTCCAAGTTATATTTCT
CCAATCAGTCTAATGTATTGAAGTATAAAACTTCTGTCTTAGCAAAATGT
CAAACTTATTTTCTTTGATATTTATCCTCGTGCT
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