CX292457

Overview
NameCX292457
Unique NameCX292457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292457 vs. ExPASy Swiss-Prot
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.660e-48
Identity = 111/195 (56.92%), Postives = 126/195 (64.62%), Query Frame = 1 
Query:   19 MGKKKSEEAGVAAK----SKEVSKDGKKEKLSVSAMLASMDPKADXXXXXXXXXXXXXXXXXXXXXXXXYTDGIDLPPSDDEDDYALDEEIDAKKQLHRQQKDESKQLEISVTDKELKKREKKDMXXXXXXXXXXXXXXRDDHDAFTVVIGSRTSVLEGQDDADANVKDITIDNFSVAARGKELLKNTSVRISHG 591
            MGKKKS+E+    K     K+ SKD KKEKLSVSAMLA MD K D                        YTDGIDLPPSD+EDD   DEE + +K+  R+ K E + LEISVTDKE KKRE K+               +DDHDAFTVVIGS+TSVLEG D ADANVKDITI++FSV+ARGKELLKN SVRISHG
Sbjct:    1 MGKKKSDESAATTKVKPSGKDASKDSKKEKLSVSAMLAGMDQKDDKPKKGSSSRTKAAPKSTS------YTDGIDLPPSDEEDDGESDEE-ERQKEARRKLKSEQRHLEISVTDKEQKKREAKERLALQAAESAKREAMKDDHDAFTVVIGSKTSVLEGDDMADANVKDITIESFSVSARGKELLKNASVRISHG 188
The following BLAST results are available for this feature:
BLAST of CX292457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB4F_ARATH3.660e-4856.92ABC transporter F family member 4 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC04015H12SK FlavFr1 Citrus clementina cDNA clone C04015H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292457 ID=CX292457; Name=CX292457; organism=Citrus clementina; type=EST; length=593bp
ACATCAAGAATAGTTCTAATGGGAAAGAAAAAATCGGAGGAGGCTGGTGT
AGCCGCAAAGTCTAAAGAAGTTTCAAAAGATGGGAAAAAAGAGAAGCTTT
CAGTCTCAGCCATGCTTGCCAGCATGGACCCGAAAGCTGATAAACCTAAG
AAGGGGTCAACCTCGAGCAGTACTTCTGGTAAATCCAAGTCAAAGGCAGT
AGCAAAACCATCTTATACCGATGGCATTGACCTCCCGCCTTCAGATGATG
AGGATGATTATGCGCTAGATGAAGAGATTGATGCCAAAAAACAACTCCAT
AGACAACAGAAAGATGAATCAAAGCAACTAGAAATCTCCGTAACTGACAA
GGAATTGAAGAAACGAGAAAAGAAAGACATGCTTGCTGCACATCATGCAG
AGCAGGCTAAGAAGGAGGCCCTAAGGGATGATCATGATGCTTTTACTGTT
GTTATTGGTAGCAGGACGTCAGTACTTGAGGGTCAAGACGATGCAGATGC
TAATGTCAAAGACATAACAATTGATAATTTCTCAGTGGCAGCCCGTGGAA
AAGAACTCTTGAAGAACACATCAGTGAGGATATCGCATGGGAA
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