CX292466

Overview
NameCX292466
Unique NameCX292466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 92/224 (41.07%), Postives = 133/224 (59.38%), Query Frame = 3
Query:   30 FYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701
            FYQ   N  Q   + S    Q+N N   +QS  G    G   + V        +  +   S  ++  L++LD + +EGKVK+A+E++     +   VDLP    + Q CGDA+AL+EAK VHE +   +    +S YN I++MYS C S++DA +VF++M ER+L +W  +I  FAKNG GEDA+D FS+FKQ G KPD ++F  +F AC  LGD+ EG+LHF+
Sbjct:   88 FYQNGYNRNQSYGEHSEIINQRNQN---WQSSDGCSSYGTTGNGVPQENNTGGNHFQQDHSGHSS--LDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFE 306          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.795e-35
Identity = 74/176 (42.05%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  174 CKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701
            C+    +A+   + Q+  T+E  D L K+ K++EA+EV+ +LE +   VD P    L + CG+ +ALEEA+ VH+     ++PL   +Y+ +++MYS C S DDA +VF+ M +R+  +W TMI   AKNG GE A+D+F++F + G KPD +IF  VF AC ++GD+ EG+LHF+
Sbjct:   63 CRRVSSYAQMVNNHQSV-TIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHD----CITPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFE 233          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  231 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFDQ*AR 713
            +E+ D   K GKVK+A+  + +L      VDL    +L + CG+A+ L+EAK VH  +   +S L +S+ + +L+MYS C   ++A SVF  M+E++L +W  +I  FAKNG GEDA+D+FS+FK+ G  PD Q+F G+F AC  LGDV EG+LHF+  +R
Sbjct:  223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSR 383          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.331e-30
Identity = 72/165 (43.64%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  204 SRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 698
            S S   N T+E  D L  +G  +EA+EVL  LE +  ++DL     L + CG  +ALE A+ VHE +  L+SP  V   N I++MYS C S+DDA  VF  M E +  +   M+  F  NG GE+A+D+F++FK+ G KP+ +IF  VFS C+  GDV EG L F
Sbjct:   79 SPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQF 243          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 70/227 (30.84%), Postives = 116/227 (51.10%), Query Frame = 3
Query:   45 QNGGQY-QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701
            Q+GG   Q+   R QY    N  Q Q    N+Q    +       + +     +S  S N         ++E++  L +    K+AIE   LL+K  +  D   F  L ++C + K+LE +K VH+H  +          N ++ M+ EC S+ DA  VF +M ++D+ SW  M+  ++ NG+G+DA+ +F +  + GLKP+++ F+ VF AC+ +G + E  LHFD
Sbjct:  143 QHGGHRPQYGGQRPQYGGPGNNYQNQ----NVQQSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEVAPPPSVEEVMRLCQRRLYKDAIE---LLDKGAMP-DRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFD 361          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  270 KEAIEVLGLLEKQ------CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFDQ 704
            K   +VL L +K       C+  D  T    +QAC +  AL+  K VH+ ++       ++  N ++ MYS C SMD A+ VF  M ER++ SW  +I+G A NG G++A++ F++  + G+ P++Q   G+ SACS  G V EGM+ FD+
Sbjct:  193 KRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDR 343          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 57/197 (28.93%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  129 GNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQ------LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701
            G   N  +A+ V++     D   +A R+ ++            LDG  +    ++A ++L  + ++ + V   TF+ L+    +  ++ + + +H  V +L         N ++ MYS+C S+D A  VF+ M  R++ SW +MITGFAK+G     ++ F+Q  + G+KP++  +V + SACS +G V EG  HF+
Sbjct:  403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFN 599          

HSP 2 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 3
Query:  261 GKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEH-VERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACS-----ALGDVVEGML----HFD 701
            G ++ A+  L L+ +  I  +D  TFS L+++C  A+     K VH   +E  + P  V  YN ++ +YS+      A  VF  M    +RD+ SW  M+  +  NG   DA+ +F +F + GL P+D  +  V  ACS      +G V  G L    HF+
Sbjct:   40 GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFE 199          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21
Identity = 48/154 (31.17%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  240 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701
            + G  + G+ +EA+ V  L++ + + V+      ++ AC    AL++ +  H ++ER    + V     ++ +Y++C  M+ A  VF  M E+++ +W + + G A NG GE  +++FS  KQ G+ P+   FV V   CS +G V EG  HFD
Sbjct:  212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFD 365          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  216 QNNGTL--EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDV 677
            Q NG      + G V+ G+ K+A+++   ++++ +  D  T   L+ AC    A E+ + +HE++ R    L       ++ MY +C  +++  +VF    ++ L+ W++MI G A NG  E A+D+FS+ +++GL+PD   F+GV +AC+  G+V
Sbjct:  220 QRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEV 375          

HSP 2 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 29/86 (33.72%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  429 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 686
            V  +N ++  +++C  +D A ++F  M +R+  SW++MI+GF +NG  +DA+D+F + ++  +KPD    V + +AC+ LG   +G
Sbjct:  192 VVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277          
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  246 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 698
            G  + G   EA+ +   +E++   ++  +FS  +  C D  ALE  K +H  + +          N +L MY +C S+++A  +F  M  +D+ SW+TMI G++++G GE A+  F   K+ GLKPDD   V V SACS  G V +G  +F
Sbjct:  383 GYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533          
The following BLAST results are available for this feature:
BLAST of CX292466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PP346_ARATH1.676e-4141.07Pentatricopeptide repeat-containing protein At4g32... [more]
PP183_ARATH1.795e-3542.05Pentatricopeptide repeat-containing protein At2g34... [more]
PP170_ARATH1.520e-3444.72Pentatricopeptide repeat-containing protein At2g25... [more]
PPR63_ARATH1.331e-3043.64Pentatricopeptide repeat-containing protein At1g29... [more]
PP153_ARATH9.241e-2430.84Pentatricopeptide repeat-containing protein At2g15... [more]
PP267_ARATH1.022e-2236.42Pentatricopeptide repeat-containing protein At3g47... [more]
PP272_ARATH1.927e-2128.93Pentatricopeptide repeat-containing protein At3g49... [more]
PP410_ARATH5.607e-2131.17Putative pentatricopeptide repeat-containing prote... [more]
PP200_ARATH9.563e-2130.77Pentatricopeptide repeat-containing protein At2g42... [more]
PP301_ARATH3.634e-2034.44Pentatricopeptide repeat-containing protein At4g02... [more]

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Properties
Property NameValue
Genbank descriptionC04016A10SK FlavFr1 Citrus clementina cDNA clone C04016A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292466 ID=CX292466; Name=CX292466; organism=Citrus clementina; type=EST; length=730bp
ATTTTGGAATTCATCAGAACAGCCCAAGTTTCTATCAGCAGGACCAAAAT
GGTGGACAGTATCAGTGGGACCAAAGTCGTAGGCAGTATCAGCAGAATCC
TAATGAAGGACAATACCAGTCCTACTCAGGGAATATTCAAAATGGGATGA
TGGCATCTCAAGTATTAAATAATTGTAAACATGAAGATGACTTTGCTGAG
GCCTCTAGGAGTAGCCAAAATAATGGAACCCTTGAGCAGCTGGATGGTTT
GGTTAAGGAGGGGAAAGTGAAGGAAGCTATAGAAGTTTTGGGGTTGTTAG
AGAAGCAGTGCATTTCTGTGGATTTACCCACATTTTCACAGTTAATGCAG
GCATGTGGGGATGCAAAAGCACTAGAAGAAGCAAAAGCTGTGCATGAACA
TGTTGAACGATTGCTGTCCCCTCTCAGAGTTAGCACTTATAACGGGATTT
TAAAAATGTATTCAGAATGTGACTCTATGGATGATGCGTTCAGTGTGTTT
AGTAATATGACAGAGCGTGATTTGACTTCTTGGGACACTATGATAACTGG
GTTCGCCAAGAATGGTCTTGGAGAGGATGCAGTTGATATTTTCTCTCAGT
TCAAGCAAGCTGGACTGAAACCAGATGATCAAATTTTTGTTGGTGTTTTC
TCTGCATGTAGTGCTTTGGGTGATGTTGTTGAGGGAATGCTGCACTTTGA
TCAATGAGCAAGACTATGGCATTGTCCCAT
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