CX292466
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41 Identity = 92/224 (41.07%), Postives = 133/224 (59.38%), Query Frame = 3 Query: 30 FYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701 FYQ N Q + S Q+N N +QS G G + V + + S ++ L++LD + +EGKVK+A+E++ + VDLP + Q CGDA+AL+EAK VHE + + +S YN I++MYS C S++DA +VF++M ER+L +W +I FAKNG GEDA+D FS+FKQ G KPD ++F +F AC LGD+ EG+LHF+ Sbjct: 88 FYQNGYNRNQSYGEHSEIINQRNQN---WQSSDGCSSYGTTGNGVPQENNTGGNHFQQDHSGHSS--LDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFE 306
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.795e-35 Identity = 74/176 (42.05%), Postives = 115/176 (65.34%), Query Frame = 3 Query: 174 CKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701 C+ +A+ + Q+ T+E D L K+ K++EA+EV+ +LE + VD P L + CG+ +ALEEA+ VH+ ++PL +Y+ +++MYS C S DDA +VF+ M +R+ +W TMI AKNG GE A+D+F++F + G KPD +IF VF AC ++GD+ EG+LHF+ Sbjct: 63 CRRVSSYAQMVNNHQSV-TIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHD----CITPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFE 233
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34 Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 3 Query: 231 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFDQ*AR 713 +E+ D K GKVK+A+ + +L VDL +L + CG+A+ L+EAK VH + +S L +S+ + +L+MYS C ++A SVF M+E++L +W +I FAKNG GEDA+D+FS+FK+ G PD Q+F G+F AC LGDV EG+LHF+ +R Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSR 383
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.331e-30 Identity = 72/165 (43.64%), Postives = 99/165 (60.00%), Query Frame = 3 Query: 204 SRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 698 S S N T+E D L +G +EA+EVL LE + ++DL L + CG +ALE A+ VHE + L+SP V N I++MYS C S+DDA VF M E + + M+ F NG GE+A+D+F++FK+ G KP+ +IF VFS C+ GDV EG L F Sbjct: 79 SPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQF 243
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24 Identity = 70/227 (30.84%), Postives = 116/227 (51.10%), Query Frame = 3 Query: 45 QNGGQY-QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701 Q+GG Q+ R QY N Q Q N+Q + + + +S S N ++E++ L + K+AIE LL+K + D F L ++C + K+LE +K VH+H + N ++ M+ EC S+ DA VF +M ++D+ SW M+ ++ NG+G+DA+ +F + + GLKP+++ F+ VF AC+ +G + E LHFD Sbjct: 143 QHGGHRPQYGGQRPQYGGPGNNYQNQ----NVQQSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEVAPPPSVEEVMRLCQRRLYKDAIE---LLDKGAMP-DRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFD 361
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22 Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 3 Query: 270 KEAIEVLGLLEKQ------CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFDQ 704 K +VL L +K C+ D T +QAC + AL+ K VH+ ++ ++ N ++ MYS C SMD A+ VF M ER++ SW +I+G A NG G++A++ F++ + G+ P++Q G+ SACS G V EGM+ FD+ Sbjct: 193 KRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDR 343
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21 Identity = 57/197 (28.93%), Postives = 103/197 (52.28%), Query Frame = 3 Query: 129 GNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQ------LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701 G N +A+ V++ D +A R+ ++ LDG + ++A ++L + ++ + V TF+ L+ + ++ + + +H V +L N ++ MYS+C S+D A VF+ M R++ SW +MITGFAK+G ++ F+Q + G+KP++ +V + SACS +G V EG HF+ Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFN 599 HSP 2 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 3 Query: 261 GKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEH-VERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACS-----ALGDVVEGML----HFD 701 G ++ A+ L L+ + I +D TFS L+++C A+ K VH +E + P V YN ++ +YS+ A VF M +RD+ SW M+ + NG DA+ +F +F + GL P+D + V ACS +G V G L HF+ Sbjct: 40 GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFE 199
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21 Identity = 48/154 (31.17%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 240 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFD 701 + G + G+ +EA+ V L++ + + V+ ++ AC AL++ + H ++ER + V ++ +Y++C M+ A VF M E+++ +W + + G A NG GE +++FS KQ G+ P+ FV V CS +G V EG HFD Sbjct: 212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFD 365
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21 Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 216 QNNGTL--EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDV 677 Q NG + G V+ G+ K+A+++ ++++ + D T L+ AC A E+ + +HE++ R L ++ MY +C +++ +VF ++ L+ W++MI G A NG E A+D+FS+ +++GL+PD F+GV +AC+ G+V Sbjct: 220 QRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEV 375 HSP 2 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 29/86 (33.72%), Postives = 55/86 (63.95%), Query Frame = 3 Query: 429 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 686 V +N ++ +++C +D A ++F M +R+ SW++MI+GF +NG +DA+D+F + ++ +KPD V + +AC+ LG +G Sbjct: 192 VVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277
BLAST of CX292466 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20 Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 3 Query: 246 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHF 698 G + G EA+ + +E++ ++ +FS + C D ALE K +H + + N +L MY +C S+++A +F M +D+ SW+TMI G++++G GE A+ F K+ GLKPDD V V SACS G V +G +F Sbjct: 383 GYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533 The following BLAST results are available for this feature:
BLAST of CX292466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >CX292466 ID=CX292466; Name=CX292466; organism=Citrus clementina; type=EST; length=730bpback to top |