CX292477

Overview
NameCX292477
Unique NameCX292477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.333e-42
Identity = 94/225 (41.78%), Postives = 134/225 (59.56%), Query Frame = 3
Query:   12 FYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            FYQ   N  Q   + S    Q+N N   +QS  G    G   + V        +  +   S  ++  L++LD + +EGKVK+A+E++     +   VDLP    + Q CGDA+AL+EAK VHE +   +    +S YN I++MYS C S++DA +VF++M ER+L +W  +I  FAKNG GEDA+D FS+FKQ G KPD ++F  +F AC  LGD+ EG+LHFES
Sbjct:   88 FYQNGYNRNQSYGEHSEIINQRNQN---WQSSDGCSSYGTTGNGVPQENNTGGNHFQQDHSGHSS--LDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFES 307          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 76/177 (42.94%), Postives = 116/177 (65.54%), Query Frame = 3
Query:  156 CKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            C+    +A+   + Q+  T+E  D L K+ K++EA+EV+ +LE +   VD P    L + CG+ +ALEEA+ VH+     ++PL   +Y+ +++MYS C S DDA +VF+ M +R+  +W TMI   AKNG GE A+D+F++F + G KPD +IF  VF AC ++GD+ EG+LHFES
Sbjct:   63 CRRVSSYAQMVNNHQSV-TIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHD----CITPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFES 234          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  213 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            +E+ D   K GKVK+A+  + +L      VDL    +L + CG+A+ L+EAK VH  +   +S L +S+ + +L+MYS C   ++A SVF  M+E++L +W  +I  FAKNG GEDA+D+FS+FK+ G  PD Q+F G+F AC  LGDV EG+LHFES
Sbjct:  223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFES 380          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  186 SRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            S S   N T+E  D L  +G  +EA+EVL  LE +  ++DL     L + CG  +ALE A+ VHE +  L+SP  V   N I++MYS C S+DDA  VF  M E +  +   M+  F  NG GE+A+D+F++FK+ G KP+ +IF  VFS C+  GDV EG L F++
Sbjct:   79 SPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQA 245          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 70/228 (30.70%), Postives = 117/228 (51.32%), Query Frame = 3
Query:   27 QNGGQY-QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            Q+GG   Q+   R QY    N  Q Q    N+Q    +       + +     +S  S N         ++E++  L +    K+AIE   LL+K  +  D   F  L ++C + K+LE +K VH+H  +          N ++ M+ EC S+ DA  VF +M ++D+ SW  M+  ++ NG+G+DA+ +F +  + GLKP+++ F+ VF AC+ +G + E  LHF+S
Sbjct:  143 QHGGHRPQYGGQRPQYGGPGNNYQNQ----NVQQSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEVAPPPSVEEVMRLCQRRLYKDAIE---LLDKGAMP-DRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDS 362          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  252 KEAIEVLGLLEKQ------CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683
            K   +VL L +K       C+  D  T    +QAC +  AL+  K VH+ ++       ++  N ++ MYS C SMD A+ VF  M ER++ SW  +I+G A NG G++A++ F++  + G+ P++Q   G+ SACS  G V EGM+ F+
Sbjct:  193 KRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFD 342          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 58/198 (29.29%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  111 GNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQ------LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            G   N  +A+ V++     D   +A R+ ++            LDG  +    ++A ++L  + ++ + V   TF+ L+    +  ++ + + +H  V +L         N ++ MYS+C S+D A  VF+ M  R++ SW +MITGFAK+G     ++ F+Q  + G+KP++  +V + SACS +G V EG  HF S
Sbjct:  403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNS 600          

HSP 2 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  243 GKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEH-VERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACS-----ALGDVVEGML----HFES 686
            G ++ A+  L L+ +  I  +D  TFS L+++C  A+     K VH   +E  + P  V  YN ++ +YS+      A  VF  M    +RD+ SW  M+  +  NG   DA+ +F +F + GL P+D  +  V  ACS      +G V  G L    HFES
Sbjct:   40 GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES 200          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 48/155 (30.97%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            + G  + G+ +EA+ V  L++ + + V+      ++ AC    AL++ +  H ++ER    + V     ++ +Y++C  M+ A  VF  M E+++ +W + + G A NG GE  +++FS  KQ G+ P+   FV V   CS +G V EG  HF+S
Sbjct:  212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDS 366          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  198 QNNGTL--EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDV 659
            Q NG      + G V+ G+ K+A+++   ++++ +  D  T   L+ AC    A E+ + +HE++ R    L       ++ MY +C  +++  +VF    ++ L+ W++MI G A NG  E A+D+FS+ +++GL+PD   F+GV +AC+  G+V
Sbjct:  220 QRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEV 375          

HSP 2 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 29/86 (33.72%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  411 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668
            V  +N ++  +++C  +D A ++F  M +R+  SW++MI+GF +NG  +DA+D+F + ++  +KPD    V + +AC+ LG   +G
Sbjct:  192 VVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277          
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR------VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686
            G  + G+ +EA+ +  LL+++ +     +F+ +++AC D   L      H HV +     +      +   N ++ MY +C  +++ + VF  M ERD  SW+ MI GFA+NG G +A+++F +  ++G KPD    +GV SAC   G V EG  +F S
Sbjct:  360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518          

HSP 2 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 41/151 (27.15%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668
            + G  +  + +EA+    ++ K+   ++  +F+ ++ AC     + +   VH  + +  SP     Y G  ++ MYS+C +++DA  VF  M +R++ SW+++IT F +NG   +A+D+F    ++ ++PD+     V SAC++L  +  G
Sbjct:  124 VSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK--SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272          
The following BLAST results are available for this feature:
BLAST of CX292477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PP346_ARATH2.333e-4241.78Pentatricopeptide repeat-containing protein At4g32... [more]
PP183_ARATH2.499e-3642.94Pentatricopeptide repeat-containing protein At2g34... [more]
PP170_ARATH3.608e-3546.20Pentatricopeptide repeat-containing protein At2g25... [more]
PPR63_ARATH5.392e-3143.11Pentatricopeptide repeat-containing protein At1g29... [more]
PP153_ARATH8.338e-2430.70Pentatricopeptide repeat-containing protein At2g15... [more]
PP267_ARATH3.503e-2236.00Pentatricopeptide repeat-containing protein At3g47... [more]
PP272_ARATH7.804e-2229.29Pentatricopeptide repeat-containing protein At3g49... [more]
PP410_ARATH5.058e-2130.97Putative pentatricopeptide repeat-containing prote... [more]
PP200_ARATH8.628e-2130.77Pentatricopeptide repeat-containing protein At2g42... [more]
PP151_ARATH1.472e-2032.08Pentatricopeptide repeat-containing protein At2g13... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04016B09SK FlavFr1 Citrus clementina cDNA clone C04016B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292477 ID=CX292477; Name=CX292477; organism=Citrus clementina; type=EST; length=687bp
ACAGCCCAAGTTTCTATCAGCAGGACCAAAATGGTGGACAGTATCAGTGG
GACCAAAGTCGTAGGCAGTATCAGCAGAATCCTAATGAAGGACAATACCA
GTCCTACTCAGGGAATATTCAAAATGGGATGATGGCATCTCAAGTATTAA
ATAATTGTAAACATGAAGATGACTTTGCTGAGGCCTCTAGGAGTAGCCAA
AATAATGGAACCCTTGAGCAGCTGGATGGTTTGGTTAAGGAGGGGAAAGT
GAAGGAAGCTATAGAAGTTTTGGGGTTGTTAGAGAAGCAGTGCATTTCTG
TGGATTTACCCACATTTTCACAGTTAATGCAGGCATGTGGGGATGCAAAA
GCACTAGAAGAAGCAAAAGCTGTGCATGAACATGTTGAACGATTGCTGTC
CCCTCTCAGAGTTAGCACTTATAACGGGATTTTAAAAATGTATTCAGAAT
GTGACTCTATGGATGATGCGTTCAGTGTGTTTAGTAATATGACAGAGCGT
GATTTGACTTCTTGGGACACTATGATAACTGGGTTCGCCAAGAATGGTCT
TGGAGAGGATGCAGTTGATATTTTCTCTCAGTTCAAGCAAGCTGGACTGA
AACCAGATGATCAAATTTTTGTTGGTGTTTTCTCTGCATGTAGTGCTTTG
GGTGATGTTGTTGAGGGAATGCTGCACTTTGAATCAT
back to top