CX292477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.333e-42 Identity = 94/225 (41.78%), Postives = 134/225 (59.56%), Query Frame = 3 Query: 12 FYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 FYQ N Q + S Q+N N +QS G G + V + + S ++ L++LD + +EGKVK+A+E++ + VDLP + Q CGDA+AL+EAK VHE + + +S YN I++MYS C S++DA +VF++M ER+L +W +I FAKNG GEDA+D FS+FKQ G KPD ++F +F AC LGD+ EG+LHFES Sbjct: 88 FYQNGYNRNQSYGEHSEIINQRNQN---WQSSDGCSSYGTTGNGVPQENNTGGNHFQQDHSGHSS--LDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFES 307
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36 Identity = 76/177 (42.94%), Postives = 116/177 (65.54%), Query Frame = 3 Query: 156 CKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 C+ +A+ + Q+ T+E D L K+ K++EA+EV+ +LE + VD P L + CG+ +ALEEA+ VH+ ++PL +Y+ +++MYS C S DDA +VF+ M +R+ +W TMI AKNG GE A+D+F++F + G KPD +IF VF AC ++GD+ EG+LHFES Sbjct: 63 CRRVSSYAQMVNNHQSV-TIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHD----CITPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFES 234
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35 Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 213 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 +E+ D K GKVK+A+ + +L VDL +L + CG+A+ L+EAK VH + +S L +S+ + +L+MYS C ++A SVF M+E++L +W +I FAKNG GEDA+D+FS+FK+ G PD Q+F G+F AC LGDV EG+LHFES Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFES 380
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31 Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 3 Query: 186 SRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 S S N T+E D L +G +EA+EVL LE + ++DL L + CG +ALE A+ VHE + L+SP V N I++MYS C S+DDA VF M E + + M+ F NG GE+A+D+F++FK+ G KP+ +IF VFS C+ GDV EG L F++ Sbjct: 79 SPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQA 245
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24 Identity = 70/228 (30.70%), Postives = 117/228 (51.32%), Query Frame = 3 Query: 27 QNGGQY-QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 Q+GG Q+ R QY N Q Q N+Q + + + +S S N ++E++ L + K+AIE LL+K + D F L ++C + K+LE +K VH+H + N ++ M+ EC S+ DA VF +M ++D+ SW M+ ++ NG+G+DA+ +F + + GLKP+++ F+ VF AC+ +G + E LHF+S Sbjct: 143 QHGGHRPQYGGQRPQYGGPGNNYQNQ----NVQQSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEVAPPPSVEEVMRLCQRRLYKDAIE---LLDKGAMP-DRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDS 362
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22 Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 3 Query: 252 KEAIEVLGLLEKQ------CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFE 683 K +VL L +K C+ D T +QAC + AL+ K VH+ ++ ++ N ++ MYS C SMD A+ VF M ER++ SW +I+G A NG G++A++ F++ + G+ P++Q G+ SACS G V EGM+ F+ Sbjct: 193 KRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFD 342
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22 Identity = 58/198 (29.29%), Postives = 103/198 (52.02%), Query Frame = 3 Query: 111 GNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQ------LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 G N +A+ V++ D +A R+ ++ LDG + ++A ++L + ++ + V TF+ L+ + ++ + + +H V +L N ++ MYS+C S+D A VF+ M R++ SW +MITGFAK+G ++ F+Q + G+KP++ +V + SACS +G V EG HF S Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNS 600 HSP 2 Score: 74.7146 bits (182), Expect = 5.070e-13 Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 3 Query: 243 GKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEH-VERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACS-----ALGDVVEGML----HFES 686 G ++ A+ L L+ + I +D TFS L+++C A+ K VH +E + P V YN ++ +YS+ A VF M +RD+ SW M+ + NG DA+ +F +F + GL P+D + V ACS +G V G L HFES Sbjct: 40 GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES 200
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21 Identity = 48/155 (30.97%), Postives = 85/155 (54.84%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 + G + G+ +EA+ V L++ + + V+ ++ AC AL++ + H ++ER + V ++ +Y++C M+ A VF M E+++ +W + + G A NG GE +++FS KQ G+ P+ FV V CS +G V EG HF+S Sbjct: 212 ISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDS 366
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21 Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 198 QNNGTL--EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDV 659 Q NG + G V+ G+ K+A+++ ++++ + D T L+ AC A E+ + +HE++ R L ++ MY +C +++ +VF ++ L+ W++MI G A NG E A+D+FS+ +++GL+PD F+GV +AC+ G+V Sbjct: 220 QRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEV 375 HSP 2 Score: 67.3958 bits (163), Expect = 8.094e-11 Identity = 29/86 (33.72%), Postives = 55/86 (63.95%), Query Frame = 3 Query: 411 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668 V +N ++ +++C +D A ++F M +R+ SW++MI+GF +NG +DA+D+F + ++ +KPD V + +AC+ LG +G Sbjct: 192 VVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277
BLAST of CX292477 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20 Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 3 Query: 228 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR------VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEGMLHFES 686 G + G+ +EA+ + LL+++ + +F+ +++AC D L H HV + + + N ++ MY +C +++ + VF M ERD SW+ MI GFA+NG G +A+++F + ++G KPD +GV SAC G V EG +F S Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518 HSP 2 Score: 82.4185 bits (202), Expect = 2.432e-15 Identity = 41/151 (27.15%), Postives = 83/151 (54.97%), Query Frame = 3 Query: 222 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFVGVFSACSALGDVVEG 668 + G + + +EA+ ++ K+ ++ +F+ ++ AC + + VH + + SP Y G ++ MYS+C +++DA VF M +R++ SW+++IT F +NG +A+D+F ++ ++PD+ V SAC++L + G Sbjct: 124 VSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK--SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272 The following BLAST results are available for this feature:
BLAST of CX292477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 179
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX292477 ID=CX292477; Name=CX292477; organism=Citrus clementina; type=EST; length=687bpback to top |