CX292485

Overview
NameCX292485
Unique NameCX292485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.101e-35
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPGLKSGDIKVQVE+DNVLLISGERKREEEK+GAK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV            TIEVK+A
Sbjct:   62 DMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.995e-33
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPGLKSGDIKVQVEDDN+LLI GERKR+EEK+GAKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV            TI+VK+A
Sbjct:   66 DMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.805e-33
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPG+KSGDIKVQVED+NVLLISGERKREEEK+G KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+           TI+VK+A
Sbjct:   59 DMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.095e-31
Identity = 73/94 (77.66%), Postives = 77/94 (81.91%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKI 280
            DMPGLKSGDIKVQV+ DNVL ISGERKRE EEK+GAKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+           TIEVKI
Sbjct:   61 DMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.269e-31
Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPGLKSGDIKVQVE DNVL+ISG+R REEEK+G KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+           TI+V++A
Sbjct:   67 DMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.982e-29
Identity = 61/94 (64.89%), Postives = 78/94 (82.98%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPGL +GDI+VQVED+ VL++SGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIEVK+A
Sbjct:   71 DMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.982e-29
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGER--KREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPG+K+ +IKVQVEDDNVL++SGER  + ++EKDG KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+           T+EVK+A
Sbjct:   72 DMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPGL +GDIKVQVED+ VL+ISGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+           TIEVK+A
Sbjct:   69 DMPGLGTGDIKVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28
Identity = 61/94 (64.89%), Postives = 78/94 (82.98%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPGL +GDI+VQVED+ VL+ISGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIE+K+A
Sbjct:   62 DMPGLSTGDIRVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
BLAST of CX292485 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28
Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 2
Query:    2 DMPGLKSGDIKVQVEDDNVLLISGERKR----EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 283
            DMPGLKS DIKVQVE++ +L+ISGER+R    EE+++  KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+           TIEVK+A
Sbjct:   69 DMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
The following BLAST results are available for this feature:
BLAST of CX292485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HSP21_SOLPE8.101e-3578.7217.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_SOYBN1.995e-3375.5317.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_PEA5.805e-3373.4017.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI1.095e-3177.6617.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN9.269e-3169.1517.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP22_MAIZE2.982e-2964.8917.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP22_IPONI2.982e-2967.7118.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE1.480e-2868.0917.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE3.297e-2864.8917.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP18_ORYSJ7.344e-2864.2918.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionC04016C05SK FlavFr1 Citrus clementina cDNA clone C04016C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292485 ID=CX292485; Name=CX292485; organism=Citrus clementina; type=EST; length=600bp
CGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAGGACG
ACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAAAGAT
GGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGAGGAA
ATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTGTGTC
AGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGAGCCC
AAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTGAGAGAGAG
AATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTACCGGTTGTTAT
GAATAATTTTGCTTGTGGGTTTGACGGTACTATGCCTCTGTAATCTCCTC
TTCCTTTTTCTTTTTTTCTCTTTCTTCCCTTTTTTGTCCAAAATTCTCTC
TGTTCACTGGTTTGTGGTTCGGTCTTTGGCATTCCGGAGGGGAAGCTGAC
GGCCGTCTACTGGTAGACATCTAGTTGTTATAATTAATGAAAAATCCAGC
TTTTATCTGAAAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCGGGTCCCC
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