CX292496

Overview
NameCX292496
Unique NameCX292496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.259e-70
Identity = 130/166 (78.31%), Postives = 146/166 (87.95%), Query Frame = 1
Query:   61 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            M Q +AMPVA +LS+ICN   +N L+  +L+ P S  P    LSI+CARVGGVEIP NKRIEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK
Sbjct:    1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK 166          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 1
Query:  115 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            G   +  T   +S  + +   + GL +Q  RVG  E+PNNK ++  LQ ++G+GR ++ Q+L  L + NK+ +D++ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPCRGQ T  N RT KGK VAIAGKKK
Sbjct:    3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKK 150          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCGA (30S ribosomal protein S13 OS=Mycoplasma gallisepticum GN=rpsM PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30
Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555
            AR+ G++IPNNKR+E SL YI+G+G+ RA++IL   K++ NK  KD+S+EEL  IR   S Y++EGDLRR  AL I+RL E+  Y G+RH +GLP RGQ TK+N RT KG R  +A KK
Sbjct:    2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVASTYVLEGDLRRDVALNIKRLMEVGSYAGLRHRRGLPVRGQRTKSNARTRKGPRKTVANKK 120          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30
Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555
            AR+  +EIPNNKR+  SL YI+G+GRT A++I    K++  I  KD+SE +L  IR+   +Y+ EGDLRR  +L I+RL E++CYRGIRH +GLP RGQ TK+N RT KG R  +AGKK
Sbjct:    2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.403e-29
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV++P +KRI   L YI G+G T A++IL D ++   I  +D++ ++   IR EV  Y++EGDLRR  +L I+RL+EI  YRG+RH +GLP RGQHTKNN RT KGK+V+IAG+KK
Sbjct:    2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.991e-29
Identity = 71/119 (59.66%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555
            ARV  VEIPN KR   SL YI G+G+T A QIL D  + ENK  + +SEEEL  IR+E  KY+ EGDLRR   L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R  IAGKK
Sbjct:    2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ORITI (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29
Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKP 561
            AR+  V +P NKR+   L YI+G+GR+ A++I  ++++  NK  KD+S +EL+ +R  + SKY +EGDLRR   L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKP
Sbjct:    2 ARISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKP 123          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCPE (30S ribosomal protein S13 OS=Mycoplasma penetrans GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555
            AR+ GV+IPNNKR+  SL YI G+G++R+++IL   K+ ENK    +SEEEL TIR   S+Y+IEGDLRR  A+ I+RL EI  YRGIRH + LP RGQ TK N RT KG R  +A KK
Sbjct:    2 ARILGVDIPNNKRVVISLTYIFGIGKSRSQEILSKAKIDENKKVSALSEEELATIRKIASEYVIEGDLRREVAMNIKRLMEIGSYRGIRHRRNLPVRGQRTKCNARTRKGPRKTVANKK 120          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28
Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555
            AR+ G+++P  KR+E  L YI+G+G  R+R+IL +  +  +   KD+SEEE+ TIRD + K ++IEGDLRR  AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + AI+GKK
Sbjct:    2 ARIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121          
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACLD (30S ribosomal protein S13 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558
            AR+ GV+IP +KR+  SL YI G+GRT A+QIL +  + E+   +D++EEEL  IRD + K  +EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQILKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
The following BLAST results are available for this feature:
BLAST of CX292496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR13_ARATH1.259e-7078.3130S ribosomal protein S13, chloroplastic OS=Arabid... [more]
RT13_ARATH1.274e-3044.59Small ribosomal subunit protein S13, mitochondrial... [more]
RS13_MYCGA6.323e-3055.4630S ribosomal protein S13 OS=Mycoplasma gallisepti... [more]
RS13_MYCAP6.323e-3054.6230S ribosomal protein S13 OS=Mycoplasma agalactiae... [more]
RS13_PEDPA2.403e-2953.3330S ribosomal protein S13 OS=Pediococcus pentosace... [more]
RS13_MYCA56.991e-2959.6630S ribosomal protein S13 OS=Mycoplasma arthritidi... [more]
RS13_ORITI9.130e-2950.8230S ribosomal protein S13 OS=Orientia tsutsugamush... [more]
RS13_MYCPE1.192e-2857.1430S ribosomal protein S13 OS=Mycoplasma penetrans ... [more]
RS13_CLONN1.192e-2855.0030S ribosomal protein S13 OS=Clostridium novyi (st... [more]
RS13_BACLD1.192e-2855.8330S ribosomal protein S13 OS=Bacillus licheniformi... [more]

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Properties
Property NameValue
Genbank descriptionC04016D04SK FlavFr1 Citrus clementina cDNA clone C04016D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292496 ID=CX292496; Name=CX292496; organism=Citrus clementina; type=EST; length=617bp
CTTGCCGTTAGTCACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACC
AAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCT
CCGTTATCTGCAACGGACATAACAATAATCTTCTCACCAACGCTTCCCTG
TCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATG
TGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACT
CGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTC
GTTGATCTCAAAATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGA
GCTCATTACAATTCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATT
TGAGGCGGTTCAATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGC
TACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACAC
AAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGA
AAAAGAAGCCCCTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGG
ATAGGGTTGATTTTCTA
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