CX292496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 1.259e-70 Identity = 130/166 (78.31%), Postives = 146/166 (87.95%), Query Frame = 1 Query: 61 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 M Q +AMPVA +LS+ICN +N L+ +L+ P S P LSI+CARVGGVEIP NKRIEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK Sbjct: 1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK 166
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30 Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 1 Query: 115 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 G + T +S + + + GL +Q RVG E+PNNK ++ LQ ++G+GR ++ Q+L L + NK+ +D++ +ELI +R+EV ++ +LRR I+RL E+ CYRG RH GLPCRGQ T N RT KGK VAIAGKKK Sbjct: 3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKK 150
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCGA (30S ribosomal protein S13 OS=Mycoplasma gallisepticum GN=rpsM PE=3 SV=3) HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30 Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555 AR+ G++IPNNKR+E SL YI+G+G+ RA++IL K++ NK KD+S+EEL IR S Y++EGDLRR AL I+RL E+ Y G+RH +GLP RGQ TK+N RT KG R +A KK Sbjct: 2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVASTYVLEGDLRRDVALNIKRLMEVGSYAGLRHRRGLPVRGQRTKSNARTRKGPRKTVANKK 120
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30 Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555 AR+ +EIPNNKR+ SL YI+G+GRT A++I K++ I KD+SE +L IR+ +Y+ EGDLRR +L I+RL E++CYRGIRH +GLP RGQ TK+N RT KG R +AGKK Sbjct: 2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.403e-29 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV++P +KRI L YI G+G T A++IL D ++ I +D++ ++ IR EV Y++EGDLRR +L I+RL+EI YRG+RH +GLP RGQHTKNN RT KGK+V+IAG+KK Sbjct: 2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 6.991e-29 Identity = 71/119 (59.66%), Postives = 82/119 (68.91%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555 ARV VEIPN KR SL YI G+G+T A QIL D + ENK + +SEEEL IR+E KY+ EGDLRR L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R IAGKK Sbjct: 2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_ORITI (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsM PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29 Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKP 561 AR+ V +P NKR+ L YI+G+GR+ A++I ++++ NK KD+S +EL+ +R + SKY +EGDLRR L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKP Sbjct: 2 ARISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKP 123
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_MYCPE (30S ribosomal protein S13 OS=Mycoplasma penetrans GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28 Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555 AR+ GV+IPNNKR+ SL YI G+G++R+++IL K+ ENK +SEEEL TIR S+Y+IEGDLRR A+ I+RL EI YRGIRH + LP RGQ TK N RT KG R +A KK Sbjct: 2 ARILGVDIPNNKRVVISLTYIFGIGKSRSQEILSKAKIDENKKVSALSEEELATIRKIASEYVIEGDLRREVAMNIKRLMEIGSYRGIRHRRNLPVRGQRTKCNARTRKGPRKTVANKK 120
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28 Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 555 AR+ G+++P KR+E L YI+G+G R+R+IL + + + KD+SEEE+ TIRD + K ++IEGDLRR AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + AI+GKK Sbjct: 2 ARIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121
BLAST of CX292496 vs. ExPASy Swiss-Prot
Match: RS13_BACLD (30S ribosomal protein S13 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.192e-28 Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 202 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 558 AR+ GV+IP +KR+ SL YI G+GRT A+QIL + + E+ +D++EEEL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQILKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121 The following BLAST results are available for this feature:
BLAST of CX292496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX292496 ID=CX292496; Name=CX292496; organism=Citrus clementina; type=EST; length=617bpback to top |