CX292499

Overview
NameCX292499
Unique NameCX292499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292499 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSJ (Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.562e-17
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 3
Query:   99 TTHLESAELLFGGKTTGLKNLPLVFDSGSSYTYLSHVAYQ-TLTSTDEERN*AAKSLKEAPE-DRTLPLCWKGKRPFQKCA*CQEV--TFKALALSFHLMGKLELFFELTPEAYLIISNRGNVLLG 464
            T H +S       K      + ++FDSG++YTY +   YQ TL+      N   K L E  E DR L +CWKGK    K     EV   F++L+L F   G  +   E+ PE YLIIS  G+V LG
Sbjct:  237 TLHFDS-----NSKAISAAPMAVIFDSGATYTYFAAQPYQATLSVVKSTLNSECKFLTEVTEKDRALTVCWKGK---DKIVTIDEVKKCFRSLSLEF-ADGDKKATLEIPPEHYLIISQEGHVCLG 353          

HSP 2 Score: 44.2838 bits (103), Expect = 7.562e-17
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  457 CLGILNGAEVGLQDLNCHR-RYYSMQDRVVIYDNEKQRIGWMPAICDRIPKSKAMNT 624
            CLGIL+G++  L     +     +M D++VIYD+E+  +GW+   CDRIP+S++  T
Sbjct:  351 CLGILDGSKEHLSLAGTNLIGGITMLDQMVIYDSERSLLGWVNYQCDRIPRSESAIT 407          
BLAST of CX292499 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSI (Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 1.429e-14
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  159 LPLVFDSGSSYTYLSHVAYQ-TLTSTDEERN*AAKSLKEAPE-DRTLPLCWKGKRPFQKCA*CQEV--TFKALALSFHLMGKLELFFELTPEAYLIISNRGNVLLG 464
            + ++FDSG++YTY +   Y  TL+      +   K L E  E DR L +CWKGK    K     EV   F++L+L F   G  +   E+ PE YLIIS  G+V LG
Sbjct:  252 MEVIFDSGATYTYFALQPYHATLSVVKSTLSKECKFLTEVKEKDRALTVCWKGK---DKIRTIDEVKKCFRSLSLKF-ADGDKKATLEIPPEHYLIISQEGHVCLG 353          

HSP 2 Score: 41.9726 bits (97), Expect = 1.429e-14
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1
Query:  457 CLGILNGAEV--GLQDLNCHRRYYSMQDRVVIYDNEKQRIGWMPAICDRIPKSKAMNT 624
            CLGIL+G++    L   N      +M D++VIYD+E+  +GW+   CDRIP+S +  T
Sbjct:  351 CLGILDGSKEHPSLAGTNLIGGI-TMLDQMVIYDSERSLLGWVNYQCDRIPRSASAIT 407          
The following BLAST results are available for this feature:
BLAST of CX292499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP1_ORYSJ7.562e-1738.10Aspartic proteinase Asp1 OS=Oryza sativa subsp. ja... [more]
ASP1_ORYSI1.429e-1439.62Aspartic proteinase Asp1 OS=Oryza sativa subsp. in... [more]
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Properties
Property NameValue
Genbank descriptionC04016D07SK FlavFr1 Citrus clementina cDNA clone C04016D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292499 ID=CX292499; Name=CX292499; organism=Citrus clementina; type=EST; length=635bp
GAATTCGGCACGAGGTGGAGGATTCCTATTCTTTGGAGATGACCTCTATG
ACTCTTCTAGAGTAGTTTGGACTTCAATGTCATCTGATTATACCAAATAC
TACTCACCTGGAGTCTGCAGAACTCCTTTTTGGTGGGAAAACTACTGGTT
TAAAGAATCTACCCCTGGTTTTTGACAGCGGGAGCTCTTATACTTACCTT
AGTCACGTTGCTTATCAAACTTTAACATCTACTGATGAAGAGAGAAACTA
AGCTGCAAAGTCCTTGAAAGAGGCACCAGAAGATCGGACGCTGCCACTCT
GTTGGAAAGGCAAGAGACCTTTTCAAAAATGTGCGTGATGTCAAGAAGTT
ACTTTCAAGGCCCTAGCCCTGAGCTTTCACTTGATGGGAAAACTAGAACT
CTTTTTTGAATTAACCCCTGAAGCATATCTGATAATATCGAATAGAGGAA
ATGTTTTGCTTGGGAATCCTGAATGGGGCTGAAGTGGGGCTGCAAGATTT
AAATTGTCATCGGAGATATTATTCAATGCAAGACAGAGTAGTTATTTATG
ACAATGAGAAGCAGAGGATTGGATGGATGCCTGCCATTTGTGATCGGATC
CCGAAATCCAAAGCCATGAATACTTGATGACCAAT
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