CX292512

Overview
NameCX292512
Unique NameCX292512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292512 vs. ExPASy Swiss-Prot
Match: MEI2_SCHPO (Meiosis protein mei2 OS=Schizosaccharomyces pombe GN=mei2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  230 LSSRYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHSEGQETSDQEALLSSN 595
            + +++T +ML   ID  ++GTYDFLYL IDF NKCNVGYAFIN + P  II+F +A  G +W  F+SEK+  ++YA IQG+  L+  F+NS +M+E+   RP +F S G     +E   + N
Sbjct:  604 IPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYAFINFIEPQSIITFGKARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENPAYRPKIFVSHGPNRGMEEPFPAPN 725          
BLAST of CX292512 vs. ExPASy Swiss-Prot
Match: PLA2_ORYSJ (Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica GN=PLA2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.983e-21
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  230 LSSRYTSKMLLAAIDENHR------------------GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVF 544
            + ++Y+ K+LL  +D NH                    +YDFLYLPIDF NKCNVGY F+N+ SP   +  Y+AF+ + WE FNS K+  + YAR+QG  AL  HF+NS    +     P+VF
Sbjct:  465 IPNKYSQKLLLNMLD-NHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSKFPCDSDEYLPVVF 586          
BLAST of CX292512 vs. ExPASy Swiss-Prot
Match: PLA2_ORYSI (Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.983e-21
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  230 LSSRYTSKMLLAAIDENHR------------------GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVF 544
            + ++Y+ K+LL  +D NH                    +YDFLYLPIDF NKCNVGY F+N+ SP   +  Y+AF+ + WE FNS K+  + YAR+QG  AL  HF+NS    +     P+VF
Sbjct:  462 IPNKYSQKLLLNMLD-NHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSKFPCDSDEYLPVVF 583          
BLAST of CX292512 vs. ExPASy Swiss-Prot
Match: TE1_MAIZE (Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.589e-21
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  245 TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFH--SEGQETSD 571
            +++ ++A+ +E     YDF+YLPIDF NKCNVGY F+N+ SP   +  Y+AF+ + WE +NS K+  + YAR+QG  AL  HF+NS    +     P+ F    +G+E +D
Sbjct:  468 SNEWIVASGEEQPFSAYDFVYLPIDFNNKCNVGYGFVNLTSPEARVRLYKAFHKQPWEVYNSRKICQVTYARVQGLEALKEHFKNSKFPCDSDEYLPVAFSPARDGKELTD 578          
The following BLAST results are available for this feature:
BLAST of CX292512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MEI2_SCHPO7.779e-2645.90Meiosis protein mei2 OS=Schizosaccharomyces pombe ... [more]
PLA2_ORYSJ1.983e-2141.46Protein terminal ear1 homolog OS=Oryza sativa subs... [more]
PLA2_ORYSI1.983e-2141.46Protein terminal ear1 homolog OS=Oryza sativa subs... [more]
TE1_MAIZE2.589e-2141.44Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC04016E08SK FlavFr1 Citrus clementina cDNA clone C04016E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292512 ID=CX292512; Name=CX292512; organism=Citrus clementina; type=EST; length=639bp
GGGAAACACCTCATAAGCGACATCACAAATTCATAGAGTTTTATGATGTG
AGAGCTGCTGAGGCGGCTCTCAGAGCATTAAATAGGAGTGATATAAATGG
GAAACGCATAAAGCTTGAACCTAGTCGCCCTGGTGGAGCACGTCGAAACC
TGATGCAACAATTAAATCAAGAGCTGGAACAAGATGAAGCCCGAGGTTTT
CGGCATCAAGTAGGCTCACCAGTGACCAACTCTCCTCCAGGTATACTTCA
AAAATGCTGCTGGCTGCCATTGATGAGAATCACAGGGGTACTTATGATTT
TCTGTACTTGCCAATTGACTTTAAGAATAAGTGCAATGTGGGGTATGCCT
TTATCAACATGGTGTCTCCTTCGCACATTATTTCCTTTTACGAGGCATTT
AATGGGAAGAAATGGGAGAAATTCAATAGTGAGAAAGTTGCATCCTTGGC
ATATGCCCGAATCCAGGGCCAGGCTGCCCTTGTAACACACTTTCAAAATT
CTAGCCTGATGAATGAAGATAAACGATGCCGGCCAATAGTCTTCCACTCT
GAGGGCCAAGAAACCAGTGATCAGGAAGCTTTACTTTCCAGCAATTTGAA
CATATTTATACGTCAGCCAGATGGGTCATATTCTGGGGA
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