CX292547

Overview
NameCX292547
Unique NameCX292547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292547 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.610e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 SGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 156
            SGPA GMLVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIFRLNYA
Sbjct:   75 SGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNYA 126
[Close]
BLAST of CX292547 vs. ExPASy Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.198e-12
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 SGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 153
            SGP GGMLVFVSG+L+   ++H LKFSQMF L+P   G+FYV ND+FRLNY
Sbjct:   72 SGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLNY 121
The following BLAST results are available for this feature:
BLAST of CX292547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NTF2_ARATH2.610e-2294.23Nuclear transport factor 2 OS=Arabidopsis thaliana... [more]
NTF2_ORYSJ3.198e-1266.67Nuclear transport factor 2 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionC04016H07SK FlavFr1 Citrus clementina cDNA clone C04016H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292547 ID=CX292547; Name=CX292547; organism=Citrus clementina; type=EST; length=468bp
TCCGGTCCCGCTGGCGGCATGCTCGTTTTTGTCTCCGGTAATCTCCAACT
CGCTGGTGAACAGCACGCTCTCAAGTTCAGCCAGATGTTCCATTTGATGC
CAACACCTCAGGGAAGCTTTTATGTGTTGAATGACATATTCAGGTTGAAC
TATGCATGAAGAGAAGATTGATTGAAAAGGGATGCAACTCCTGAAGGAGT
GAAACATGTTTCCTTATCTTTATTGGATTTTAAACATTTAAATGAACACT
GGGTTTTTCTGTGGTCGGTTATGTTTAAGGTTCCCTTGTGCCTTTCCTGA
ACTTTAAATAGAGACATCTTTTCTGTGATTGGTTGAGTAACTGCAAGATC
TCCCTGAAGAAGTTGGGTCTTAGTGAAATGAATCAGAAATATTTGCAATT
GTCTGATTACAAAAAAAAAAAAAAAAAACTCGGGGGGGGGCCCGGTCCCC
AATTCCCCCTATAGGGAG
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