CX292550

Overview
NameCX292550
Unique NameCX292550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.199e-59
Identity = 116/153 (75.82%), Postives = 127/153 (83.01%), Query Frame = 1
Query:  169 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDR-------------ATSGVYDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            MST +KITLKSSDGE FE+DEAVALESQTIKHMIEDDC DNGIPLPNVTSKILSKVIEYCK+HVEA++  +              A+    +DLK WD++F+KVDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKND
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 153          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.488e-59
Identity = 112/141 (79.43%), Postives = 125/141 (88.65%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVY---DDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            ++KKI LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+HVEA+ S   A  G     DDLKAWD DF+K+DQATLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKND
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKND 142          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.566e-51
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASK----SDDRATSGVYDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            T K I LKSSDGE+FE++EAVA++SQTIKHMIEDDCADNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S   D+LK WD++FVKVDQ TLFDLILAANYLNI  LLDLTC+ VAD ++GKTPE++R  FNIKND
Sbjct:    4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKND 145          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.582e-49
Identity = 98/142 (69.01%), Postives = 111/142 (78.17%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASK----SDDRATSGVYDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            T K I LKSSDGE+FEV+EAVA+ESQTIKHMIEDDC DNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S    +LK WD DFVKVD  TLFDL+ AANYLNI  LLDLTC+ VAD ++GKTP ++R+ FNIKND
Sbjct:    4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKND 145          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.985e-46
Identity = 94/138 (68.12%), Postives = 110/138 (79.71%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVYDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKKH       D A     +DL  WD  F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR TFNI+ND
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH-----HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIEND 134          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.681e-45
Identity = 94/139 (67.63%), Postives = 110/139 (79.14%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK-HVEASKSDDRATSGVYDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK HV      D A     +DL  WD  F+ ++Q+T+F+LILAANYLNIKSL DLTCQTVADMIKGKTPEEIR TFNI+ND
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHV------DEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIEND 134          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.127e-41
Identity = 87/139 (62.59%), Postives = 104/139 (74.82%), Query Frame = 1
Query:  178 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVYDDLKAWDTDFVKV--DQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            SK + L SSDGE+F+V+EAVA++SQTI HMIEDDC  NG+P+ NVT  ILSKVIEYCKKHV +    D  T    D+LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+ND
Sbjct:    2 SKMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVS----DSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIEND 136          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 87/138 (63.04%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVYDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            ++KKI LKSSDG +FEV+E  A + QTI HM EDDC DNGIPLP VT KIL  VIEYC KH       D A     +DLK WD +F++  Q+T+FDLI+AANYLNIKSLLDL CQTVADMIK  T E  RK FNI+ND
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIEND 134          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.543e-41
Identity = 86/139 (61.87%), Postives = 103/139 (74.10%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVYDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            ++KKI LKSSDG +FEV+E  A + Q I  HM E+DC DNGIPLPNVT KIL+ VIEYC KH       D A     DDLK WD +F++ D +T+FDLI AANYLNIKSL DL CQTVA++IKG TPE+IR+ FNI+ND
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH-----HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIEND 135          
BLAST of CX292550 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.070e-39
Identity = 84/139 (60.43%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  175 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVYDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKND 588
            +S KI L SSDGE+FEV+EAVA + + ++HMIEDDC    +PL NVT KILS V+EYCKKHV   +S         D+ K WD +F+ K DQ T+F L+LAANYLNIK LLDL+ QTVAD IK KTPEEIR+ FNI+ND
Sbjct:    2 SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDEES---------DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIEND 131          
The following BLAST results are available for this feature:
BLAST of CX292550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SKP1B_ARATH1.199e-5975.82SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH3.488e-5979.43SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH4.566e-5171.13SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH5.582e-4969.01SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH1.985e-4668.12SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.681e-4567.63SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH1.127e-4162.59SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH1.472e-4163.04SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH9.543e-4161.87SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH3.070e-3960.43SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionC04016H10SK FlavFr1 Citrus clementina cDNA clone C04016H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292550 ID=CX292550; Name=CX292550; organism=Citrus clementina; type=EST; length=588bp
AGAGAGAGAGAGAGAGAGAGACCTCGTGCCATATTCGGCACGAGGAACAC
ACACCTTTTCAAAGGGCTTTTCTTCTCTTCTCTTCATCTTTATCCTCCTT
TTATATATAAATATAATAAATATCAAGAAAGTTAGGGTTTCAAGAGTGTG
TTGGATCGATCGATCAGAATGTCAACGAGTAAGAAAATCACGCTGAAGAG
CTCGGATGGAGAGGCGTTCGAGGTCGATGAAGCAGTGGCGTTGGAATCGC
AGACGATCAAGCATATGATTGAGGACGATTGCGCCGACAACGGAATCCCT
TTGCCTAACGTTACCAGTAAGATCCTCTCTAAGGTCATCGAGTACTGCAA
GAAGCACGTCGAGGCATCTAAGTCCGACGATCGGGCCACTAGCGGCGTCT
ATGATGATCTCAAGGCTTGGGATACCGATTTCGTCAAAGTCGATCAGGCC
ACTCTCTTTGATCTTATTCTTGCGGCAAACTACCTGAACATCAAGAGCTT
GCTGGACTTAACTTGCCAGACTGTTGCAGACATGATTAAGGGAAAGACTC
CAGAGGAGATCCGCAAGACATTCAATATCAAGAACGAC
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