CX292552

Overview
NameCX292552
Unique NameCX292552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 8.250e-106
Identity = 179/222 (80.63%), Postives = 197/222 (88.74%), Query Frame = 3
Query:    3 IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSY+SRT+GWDQYP GRWGDSRNPSYGAL+D+QF RPR R KKL EEWAVP+KSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL KIN KGFLTINSQPAVNGERSDS+SVGWGGPGGYVYQKAYLEFFCS EKL  L++KSK  P +T++AVNK+G   +N+    VNAVTWGVFP KE
Sbjct:  303 IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLDQLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKE 524          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 6.537e-103
Identity = 173/222 (77.93%), Postives = 192/222 (86.49%), Query Frame = 3
Query:    3 IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            IEESK+SR LPWRP TNVFRVKEDVRPIFWANRPKSYL RT+GWDQYP GRWGDSRNPSYGAL+DHQF RPR R KKL EEWAVPLKSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL  IN KGFLTINSQPAVNGE+SDS +VGWGGPGGYVYQKAYLEFFC+ EKL  L++K K  P +T++AVNK+G   +N++   VNAVTWGVFP KE
Sbjct:  303 IEESKVSRPLPWRPATNVFRVKEDVRPIFWANRPKSYLKRTLGWDQYPHGRWGDSRNPSYGALTDHQFTRPRGRGKKLQEEWAVPLKSVEDISERFTNFCQGKLTSSPWSELDGLQPETKIIDDQLVNINQKGFLTINSQPAVNGEKSDSPTVGWGGPGGYVYQKAYLEFFCAKEKLDQLIEKIKAFPSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKE 524          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 372.859 bits (956), Expect = 8.537e-103
Identity = 175/222 (78.83%), Postives = 192/222 (86.49%), Query Frame = 3
Query:    3 IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            I+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P+GRWGDSR+ SYGALSDHQF RPR+RDKKL +EW VPLKSVEDI EKFK  CLG L+SSPWSELDGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEFFCS EKL A+V+K K LP IT+MAVNK   W +N  Q DVNAVTWGVFPAKE
Sbjct:  303 IDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQGRWGDSRSASYGALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWSELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEFFCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKE 524          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.325e-100
Identity = 165/222 (74.32%), Postives = 188/222 (84.68%), Query Frame = 3
Query:    3 IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            I+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P GRWGDS + +Y  LSD+QF RP+ RDKKL +EW VPLKS+ED+ EKFK  C+G L+SSPWSELDGLQPETKIINEQLGKIN  GFLTINSQP+VN  +SDS ++GWGGPGGYVYQKAYLEFFCS +KL  LV+KSK  P IT+MAVNK  NW +N  ++DVNAVTWGVFPAKE
Sbjct:  303 IDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWNDFPHGRWGDSHSAAYSTLSDYQFARPKGRDKKLQQEWVVPLKSIEDVQEKFKELCIGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQKAYLEFFCSKDKLDTLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKE 524          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 8.677e-47
Identity = 97/225 (43.11%), Postives = 137/225 (60.89%), Query Frame = 3
Query:   24 RSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +E
Sbjct:  345 RPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGRE 568          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.525e-46
Identity = 97/225 (43.11%), Postives = 136/225 (60.44%), Query Frame = 3
Query:   24 RSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  + L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +E
Sbjct:  345 RPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPRELLLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGRE 568          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.624e-46
Identity = 94/225 (41.78%), Postives = 138/225 (61.33%), Query Frame = 3
Query:   24 RSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F++Y  G       ++   PW++ + L  ET ++ E+L ++N  G LTINSQP +N + S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +E
Sbjct:  344 RPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQDWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPREELLKMWGEELTSEESVFEVFEHYLSGEPNRHGYRVTCLPWND-EPLAAETSLMKEELLRVNRLGILTINSQPNINAKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKTYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGRE 567          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.593e-46
Identity = 94/225 (41.78%), Postives = 138/225 (61.33%), Query Frame = 3
Query:   24 RSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            R LPW    +  R  EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E +++ F ++  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +E
Sbjct:  344 RPLPWALSAHPKRRVEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFQVFAHHLSGEPNQNGYKVTCLPWND-EPLAAETSLMKEELLRVNRRGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKKYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGRE 567          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.121e-45
Identity = 92/203 (45.32%), Postives = 121/203 (59.61%), Query Frame = 3
Query:   60 RVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKE 668
            R+ E VRPIFW  R +SY+SRT  WD+ P GRWGDSR+P++G     ++   R   K++   W  P KS  +I + F  YC  K+ S PWS+L  +  E  +I +QL  +N   FLTINSQPA+NGE+S     GWG P GYV+QK Y+EFF  P  L  L +  K L  +++   NK G+   N      NAVTWGVFP +E
Sbjct:  318 RINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRSPAFGEFDAIRYGL-RMSPKEITTSWGSP-KSYSEIGDLFARYCEKKISSLPWSDLP-ISDEADLIRDQLLSMNRNAFLTINSQPALNGEKSSHPVFGWGPPNGYVFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNRE 517          
BLAST of CX292552 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.434e-41
Identity = 96/231 (41.56%), Postives = 137/231 (59.31%), Query Frame = 3
Query:   24 RSLPWRPPT-NVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMR---PRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELD-GLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPE---KLTALVDKSKVLPFITFMAVNKEGNW-KANVNQTDVNAVTWGVFPAKE 668
            R  PW+  + +  R  E VRPI+W+ RP+SY++RT  WDQ+P GRWG+S +P++G +S +        R+ D +L   +   ++S ED+   F NY          K+   PW+E + G+QPET +I+EQL   N  G LT+NSQP+VNG  S    VGWG PGGY YQKAYLE F + E   KL  ++++   +  + + A+NK+  + K N  +T   AVTWGVFP  E
Sbjct:  358 RVFPWKNRSQHPIRCLESVRPIYWSFRPRSYITRTRDWDQFPNGRWGNSSSPAFGDVSSYYLSNLTTVRNADDRL-AMFGANIESFEDVKRVFINYITQAPNADGVKVTVLPWTEAETGVQPETSLISEQLVWCNENGILTVNSQPSVNGAPSTDPLVGWGKPGGYCYQKAYLECFMTAELSDKLIQIIEREFPVR-VNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSE 586          
The following BLAST results are available for this feature:
BLAST of CX292552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR_ORYSJ8.250e-10680.63Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE6.537e-10377.93Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR2_ARATH8.537e-10378.83Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH2.325e-10074.32Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR_HUMAN8.677e-4743.11Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_MACFA2.525e-4643.11Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_MOUSE5.624e-4641.78Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_BOVIN9.593e-4641.78Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR1_SCHPO8.121e-4545.32Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR_CAEEL1.434e-4141.56Probable methylenetetrahydrofolate reductase OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionC04016H12SK FlavFr1 Citrus clementina cDNA clone C04016H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292552 ID=CX292552; Name=CX292552; organism=Citrus clementina; type=EST; length=668bp
TGATTGAAGAGTCCAAAATTTCCAGATCCTTACCCTGGAGACCCCCTACT
AATGTTTTCCGCGTTAAGGAAGATGTTCGTCCAATATTTTGGGCTAATCG
TCCAAAGAGCTACTTATCAAGGACAGTTGGTTGGGACCAGTATCCACGTG
GACGATGGGGTGATTCTCGTAACCCATCATATGGTGCTTTATCTGATCAT
CAGTTTATGCGGCCCCGTTCACGTGACAAGAAACTTCATGAAGAATGGGC
TGTCCCCTTGAAAAGTGTTGAAGATATCTATGAAAAATTTAAGAATTACT
GCCTTGGGAAATTGAGAAGCAGTCCTTGGTCAGAGTTAGACGGGCTTCAG
CCAGAGACCAAAATCATAAATGAACAGCTTGGAAAGATCAATGTGAAAGG
TTTCCTCACTATCAACAGCCAGCCGGCAGTCAATGGTGAAAGATCCGATT
CATCTTCTGTTGGTTGGGGTGGGCCAGGAGGATATGTTTATCAGAAAGCA
TATCTAGAGTTTTTCTGCTCACCAGAGAAGTTGACTGCACTTGTTGACAA
AAGCAAAGTTCTTCCATTCATAACCTTCATGGCTGTCAACAAAGAAGGGA
ACTGGAAAGCCAATGTTAATCAAACTGATGTGAATGCCGTAACTTGGGGG
GTCTTCCCAGCCAAGGAG
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