CX292556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 2.147e-52 Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 1 Query: 1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 315 AQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK MPD+A Sbjct: 338 AQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPDYA 442
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 201.06 bits (510), Expect = 2.374e-51 Identity = 85/104 (81.73%), Postives = 98/104 (94.23%), Query Frame = 1 Query: 1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDH 312 AQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK MP++ Sbjct: 343 AQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPNY 446
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 1.822e-43 Identity = 73/105 (69.52%), Postives = 94/105 (89.52%), Query Frame = 1 Query: 1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 315 AQL+GTVHCDYP+WIEILCH+I+VHIPHHISP+IPSYNL+AA++S+ +NWG+YLN+ NWRLM+TIMT CHIYDK+ NYV+F++ P++SQPI+ K VMPD+A Sbjct: 343 AQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGNYVSFEKAVPEESQPISIPKRVMPDYA 447
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 2.908e-41 Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 1 Query: 1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAP 264 AQLNGTVHCDYPKWIEILCH+INVHIPHHISPRIPSYNL+AAHKS+Q+NWG+YLNEASWNWRLMKTIMTVC +YDKE++ + P Sbjct: 337 AQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCQVYDKEKSLCCLRRTCP 424
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.310e-30 Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1 Query: 1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQL 258 AQLNGTVHCDYP+W+E+LCH+INVHIPHH+S IPSYNL+ AH S+++NWG +L E ++NW+LM+ I CH+YD E Y F L Sbjct: 263 AQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFLYERTFNWQLMQQISGQCHLYDPEHGYRTFGSL 348
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14 Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL-NEASWNWRLMKTIM 204 +QL+GTVHC+Y +W E LCH+INVHIPHH++ IP YNL+ ++ G+YL E ++W LMK ++ Sbjct: 262 SQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEYLYPECDFSWGLMKQVV 330 The following BLAST results are available for this feature:
BLAST of CX292556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX292556 ID=CX292556; Name=CX292556; organism=Citrus clementina; type=EST; length=497bpback to top |