CX292556

Overview
NameCX292556
Unique NameCX292556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.147e-52
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 1
Query:    1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 315
            AQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK  MPD+A
Sbjct:  338 AQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPDYA 442          
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 2.374e-51
Identity = 85/104 (81.73%), Postives = 98/104 (94.23%), Query Frame = 1
Query:    1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDH 312
            AQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK  MP++
Sbjct:  343 AQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPNY 446          
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.822e-43
Identity = 73/105 (69.52%), Postives = 94/105 (89.52%), Query Frame = 1
Query:    1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 315
            AQL+GTVHCDYP+WIEILCH+I+VHIPHHISP+IPSYNL+AA++S+ +NWG+YLN+   NWRLM+TIMT CHIYDK+ NYV+F++  P++SQPI+  K VMPD+A
Sbjct:  343 AQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGNYVSFEKAVPEESQPISIPKRVMPDYA 447          
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.908e-41
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAP 264
            AQLNGTVHCDYPKWIEILCH+INVHIPHHISPRIPSYNL+AAHKS+Q+NWG+YLNEASWNWRLMKTIMTVC +YDKE++     +  P
Sbjct:  337 AQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCQVYDKEKSLCCLRRTCP 424          
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.310e-30
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQL 258
            AQLNGTVHCDYP+W+E+LCH+INVHIPHH+S  IPSYNL+ AH S+++NWG +L E ++NW+LM+ I   CH+YD E  Y  F  L
Sbjct:  263 AQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFLYERTFNWQLMQQISGQCHLYDPEHGYRTFGSL 348          
BLAST of CX292556 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 AQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL-NEASWNWRLMKTIM 204
            +QL+GTVHC+Y +W E LCH+INVHIPHH++  IP YNL+      ++  G+YL  E  ++W LMK ++
Sbjct:  262 SQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEYLYPECDFSWGLMKQVV 330          
The following BLAST results are available for this feature:
BLAST of CX292556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAD6C_BRANA2.147e-5282.86Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH2.374e-5181.73Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SPIOL1.822e-4369.52Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
FAD6C_SOYBN2.908e-4180.68Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
DESA_SYNY32.310e-3061.63Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL2.320e-1449.28Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04017A04SK FlavFr1 Citrus clementina cDNA clone C04017A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292556 ID=CX292556; Name=CX292556; organism=Citrus clementina; type=EST; length=497bp
GCCCAGCTTAATGGGACAGTTCATTGTGATTACCCTAAATGGATCGAGAT
TCTCTGCCACAACATCAATGTCCACATCCCCCATCATATCTCGCCGAGAA
TACCAAGCTATAATTTGAAGGCAGCTCATAAATCTATCCAACAGAATTGG
GGGAAGTATTTGAACGAGGCTTCATGGAATTGGCGTTTGATGAAGACAAT
AATGACAGTATGCCACATCTATGACAAGGAGCAAAATTATGTGGCGTTTG
ACCAACTTGCCCCCAAAGATTCTCAACCAATTACATTCCTTAAAAGTGTG
ATGCCTGATCATGCTTGAATTTTTGCCACTTCCTCAATCCATCTCTTTTC
AGTTATTTCTTATCCGTAAGTCTTCACTTTTTTGGTCAAATTAGGTGTAT
CTGTTCCCGTTACTTAGATGTTGCTTACGTTGTTGAAACTACTCTTTCCT
AAGATTTCCAATTGAGTAGGGGAGAAATAGTCGAAATGAAGGGTTCC
back to top