CX292566

Overview
NameCX292566
Unique NameCX292566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292566 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 1.948e-92
Identity = 168/229 (73.36%), Postives = 198/229 (86.46%), Query Frame = 3
Query:   18 KNNRIIRETGLRELGQLEQDIVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT---PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIGGG 695
            K N +IRE GLRELGQLEQD+VFGDAG KDVIK+L+ +E+ +RE KLRLLMI+A+IYPEKFEGEKG NLMKLAKL++DDMTAVNNM LLG A+++KK+T G F+LKFD+HKKKRA RK+R   E  WQLSRFYPMIEEL+EKL K EL K+D+PCMNDPSP+FHG+T    +A +++  AA SMRSRRTPTWA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFI GG
Sbjct:  386 KLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEKFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKERQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQAAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGG 613          
BLAST of CX292566 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 286.96 bits (733), Expect = 6.726e-77
Identity = 150/237 (63.29%), Postives = 178/237 (75.11%), Query Frame = 3
Query:   15 GKNNRIIRETGLRELGQLEQDIVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPS----------PTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIGGG 695
            GK NRIIR+TGLR+LGQLEQD+VFGDAG KDVI FL   +D   ENKLRLLMI A++YPEKFEG+KG+ LM+LA+L+  DM  ++NM+L+ G+ E+K  + G+FSLKFD  K K+A RKDRSG EETWQL RFYPMIEEL+EKL K +LSK DY CMN  S               + P+A+       HSMRSRRT TWARP SSDDGYSSDSVLK AS++FKK+GQRIFVFI GG
Sbjct:  380 GKINRIIRDTGLRDLGQLEQDLVFGDAGAKDVINFLRTNQDTNPENKLRLLMIYATVYPEKFEGDKGVKLMQLARLSPVDMKVISNMQLIAGSPENKAKS-GSFSLKFDAGKTKQANRKDRSGEEETWQLFRFYPMIEELLEKLVKGDLSKSDYLCMNQSSHKEESEARTGSVRKSSAPTAVPERKATPHSMRSRRTATWARPHSSDDGYSSDSVLKSASTEFKKLGQRIFVFIIGG 615          
BLAST of CX292566 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.268e-75
Identity = 148/225 (65.78%), Postives = 171/225 (76.00%), Query Frame = 3
Query:   24 NRIIRETGLRELGQLEQDIVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGA-LESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIGGG 695
            NR I E GLR+LGQLEQD+VFGDAG KDVIKFL+    I+ E+KLRL+MIVA+IYP+KFEGEKG  +M+LAKL+ DD+ AVNNMRLLG    E KKST G+F LKFD+ K KRAAR+DR G  +TWQLSRFYP++EELVEKL K  L K DYPCMN+P PTF+  + S   + V       SRRTPTWAR   SDDGY SDSVL  ASS FK+ GQRIFVFI GG
Sbjct:  389 NRTIMEQGLRDLGQLEQDLVFGDAGRKDVIKFLSTNHIISHESKLRLIMIVAAIYPKKFEGEKGRKMMELAKLSGDDVVAVNNMRLLGPVHTECKKSTTGSFPLKFDVLKTKRAARRDRVGETQTWQLSRFYPIVEELVEKLSKGHLPKQDYPCMNEPKPTFYSGSLSPSASPV----LPHSRRTPTWARRHLSDDGYFSDSVLGRASSGFKRKGQRIFVFIVGG 609          
BLAST of CX292566 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 9.407e-71
Identity = 141/231 (61.04%), Postives = 173/231 (74.89%), Query Frame = 3
Query:   15 GKNNRIIRETGLRELGQLEQDIVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPA---AHSMRSRRT-PTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIGGG 695
            GK N  I+E  L+++GQLEQD+VFGDAG K++I F     DI+RENKLRLLM+ A+I P+K   +KG  LM+LA L+ADDM AV+NMR L G  +SKKS+ G F+LKFD+ KK+   RK+R G E  W LSRFYP++EEL+EKL K EL KD+Y  +NDPSP+F G  PSA T   PA   A SMRSRRT  TWARPR SDDGYSSDSVLKH SS+ +K+GQR+FVF+ GG
Sbjct:  385 GKLNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKTRSDKGAKLMQLAGLSADDMIAVSNMRCLCGH-DSKKSSAGGFTLKFDLRKKRHGIRKERIGEESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRG-IPSASTQTSPAHQPAQSMRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGG 613          
BLAST of CX292566 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.952e-69
Identity = 134/230 (58.26%), Postives = 171/230 (74.35%), Query Frame = 3
Query:   15 GKNNRIIRETGLRELGQLEQDIVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSM--RSRRTPTWARPRSSDDGYSSD-SVLKHASSDFKKMGQRIFVFIGGG 695
            GK N+ IRE GLR++GQ+EQD+VFGDA  K+VI  L +K+D++ ENKLRLL+I A +YPEKFEG+KG  LM+LAKL  D+M A+N++R L G+   K S  G FSLKFD  KKK AAR +R  G+ETW LSRF+P+IEEL+EKL K  L  ++YP M++PS T  G+T SA   +   A  M  RSRRTPTWA+ R+SDD  SSD SVL+H S+DFK++G RIFVF+ GG
Sbjct:  382 GKINKFIREYGLRDIGQVEQDLVFGDAAAKEVISILRSKQDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKASRPGGFSLKFDAQKKKNAARTERQDGDETWALSRFFPLIEELIEKLSKGALPLNEYPSMSEPSSTEQGSTQSAAATKPAQAQPMSRRSRRTPTWAKSRNSDDSQSSDSSVLRHGSNDFKRLGNRIFVFMIGG 611          
The following BLAST results are available for this feature:
BLAST of CX292566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KEULE_ARATH1.948e-9273.36SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1A_ARATH6.726e-7763.29Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1B_ARATH1.268e-7565.78Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
SEC1A_ORYSJ9.407e-7161.04Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1B_ORYSJ3.952e-6958.26Probable protein transport Sec1b OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC04017B03SK FlavFr1 Citrus clementina cDNA clone C04017B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292566 ID=CX292566; Name=CX292566; organism=Citrus clementina; type=EST; length=698bp
GGAATTCGGCACGAGGGAAAAATAATAGAATTATTCGGGAGACTGGACTT
AGAGAGCTTGGGCAGCTCGAGCAGGACATTGTTTTCGGTGATGCCGGATT
TAAGGATGTAATTAAATTTTTGACTGCAAAAGAGGACATAACTCGTGAAA
ATAAGTTGCGGTTGTTGATGATTGTTGCATCCATTTATCCTGAGAAATTT
GAGGGTGAAAAGGGTCTCAATTTGATGAAGTTAGCAAAACTAACAGCCGA
TGATATGACTGCTGTGAATAATATGAGATTACTTGGGGGAGCATTAGAGA
GTAAAAAGAGTACAATCGGAGCCTTTTCTCTGAAGTTCGATATCCACAAG
AAAAAGCGGGCAGCTAGGAAAGATCGCAGCGGCGGAGAAGAAACGTGGCA
GTTATCTCGTTTTTACCCAATGATAGAGGAACTTGTTGAAAAACTCGGTA
AAAATGAACTATCAAAGGATGATTATCCCTGTATGAATGATCCGAGTCCA
ACATTCCATGGGACAACCCCCTCTGCATTAACAAATGAAGTTCCAGCTGC
TCATTCAATGAGATCAAGACGGACACCAACGTGGGCTCGTCCTCGGAGCT
CTGATGATGGATATTCAAGTGATTCAGTACTAAAACATGCATCGAGTGAT
TTTAAGAAGATGGGTCAACGTATTTTTGTATTTATTGGTGGTGGTACC
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