CX292788

Overview
NameCX292788
Unique NameCX292788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTPDD 329
            D+SLGVAIGSS QISMF +PFCVVIGW+MG  MDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDP  DD
Sbjct:  351 DLSLGVAIGSSIQISMFAVPFCVVIGWMMGAQMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPHQDD 440          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTPDDNQ 335
            DI+LGVAIGSSTQISMF IPFCVVIGWIMG+ MDLNFQLFETATLFITV+VVAF LQEGTSNYFKGLMLILCYLIVAASFFVH DP   +N+
Sbjct:  346 DITLGVAIGSSTQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPDSSNNK 437          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTPD 326
            D+SLGVAIGSS QISMF +PFCVVIGW+MG+ MDLNFQLFETA LFITVIVVAFFLQEG+SNYFKGLMLILCYLIVAASFFVHEDP  D
Sbjct:  351 DLSLGVAIGSSIQISMFAVPFCVVIGWMMGQQMDLNFQLFETAMLFITVIVVAFFLQEGSSNYFKGLMLILCYLIVAASFFVHEDPHQD 439          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTPDDN 332
            DI+LGVAIGSSTQISMF IPFCVVIGW+MG+ MDLNFQLFETATLFITV+VVAF LQ+G +NY KGLMLILCYLIVAASFFVH DP   D+
Sbjct:  327 DITLGVAIGSSTQISMFVIPFCVVIGWMMGQKMDLNFQLFETATLFITVLVVAFMLQDGVANYLKGLMLILCYLIVAASFFVHVDPQSSDD 417          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQ-EGTSNYFKGLMLILCYLIVAASFFVHEDP 317
            D+SLGVAIGSS QISMF +PFCVVIGW+MG  MDLN QLFETATL ITVIVVAFFLQ EGTSNYFK LMLILCYLIVAASFFVHEDP
Sbjct:  359 DLSLGVAIGSSIQISMFAVPFCVVIGWMMGAQMDLNLQLFETATLLITVIVVAFFLQLEGTSNYFKRLMLILCYLIVAASFFVHEDP 445          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDP 317
            DISLGVAIGSS QISMFGIPFCVV+GW+MG+PMDLNF LFETA+L  TV+VVAF LQ+GTSN  KGLML LCYLIVAASF+VH DP
Sbjct:  351 DISLGVAIGSSIQISMFGIPFCVVMGWMMGKPMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYVHADP 436          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 53/93 (56.99%), Postives = 74/93 (79.57%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTPDDNQV 338
            DISLGVA+GS+TQIS+F +P  V++ WI+G  MDLNF + ET++L + +I+ AF LQ+GTS+Y KGL+L+LCY+I+AA FFV + P P+D  V
Sbjct:  353 DISLGVALGSATQISLFVVPLSVIVAWILGIKMDLNFNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFFVDQIPQPNDLDV 445          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 51/91 (56.04%), Postives = 70/91 (76.92%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPTPDDN 332
            DI+LGVA+GS+TQISMF +P  V++ WIMG  MDL+F+L ET +LF+ V+V AF LQ+GTS+Y KG++L+LCY+++ A FFV   P    N
Sbjct:  343 DITLGVALGSATQISMFVVPLSVLVAWIMGVQMDLDFKLLETGSLFMAVLVTAFTLQDGTSHYLKGILLLLCYIVIGACFFVARQPAGHAN 433          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 47/82 (57.32%), Postives = 65/82 (79.27%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFV 305
            DI+LGV++GS+TQISMF +P  V++ W MG PMDL+F L ET +LF+ ++V AF LQEG S+Y KGL+L+LCY +++  FFV
Sbjct:  353 DITLGVSLGSATQISMFVVPVSVIVAWTMGIPMDLDFNLLETGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFV 434          
BLAST of CX292788 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 46/87 (52.87%), Postives = 67/87 (77.01%), Query Frame = 3
Query:   60 DISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPT 320
            DI+LG+A+GS+TQI++F +P  V++ W MG  MDLNF L ETA   ++++V +  LQ+GTSNY KGL+L+LCY+++AA FFV   P+
Sbjct:  355 DITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPS 441          
The following BLAST results are available for this feature:
BLAST of CX292788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAX5_ARATH2.241e-4090.00Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ3.236e-3986.96Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX2_ARATH9.415e-3987.64Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX3_ORYSJ8.812e-3782.42Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX6_ARATH1.272e-3587.36Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX4_ORYSJ2.400e-3481.40Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
CAX3_ARATH4.103e-2656.99Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ1.320e-2456.04Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX1B_ORYSJ4.246e-2357.32Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX4_ARATH9.459e-2352.87Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04019E08SK FlavFr1 Citrus clementina cDNA clone C04019E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292788 ID=CX292788; Name=CX292788; organism=Citrus clementina; type=EST; length=695bp
TTTTCTTACATTTCACTGTACTGTTACAGTGCTTGCTATAATGTATACAT
TCTCTGCAGGACATATCTTTGGGAGTGGCAATAGGGTCATCGACACAGAT
ATCTATGTTTGGGATCCCATTTTGCGTGGTTATTGGGTGGATAATGGGTC
GACCTATGGACTTAAACTTTCAACTTTTTGAGACGGCAACTCTTTTCATA
ACTGTTATAGTTGTGGCATTCTTTCTGCAGGAAGGAACTTCTAATTACTT
TAAAGGACTCATGCTGATTCTTTGCTATCTGATAGTAGCTGCTAGTTTCT
TTGTGCATGAAGATCCTACTCCAGATGATAATCAAGTAAAAACTTAGTTC
ATGAAAGCAGCAAATCGGCTTATGAGATGTATTTCCTGAAGCTACGGATC
AACTTGGAGGCTGCTGTATATATTTATATATTCAGCTTCGAAACGCAGAC
AAGCCATTATCTCGACTTCCCTAGCTCTTGCTCAGTAACATATTGAGCGG
GTTTCTTGCTGTTTTTTGTGCTCTATCCTTTCAATACCTGCTTTGGTGCT
AAATGCTTATGACGAGTAAGAAAAATTGTGTATATCACAGAGAAAAACGG
TTCATTTCTCTTTGCCTTGTAACTCTTTCTCAATTCTTTTGAAGAGATTT
CCATTTGTTGCTTCCACTTTGTGCACGATATTTCAATGACTGTCC
back to top