CX292836

Overview
NameCX292836
Unique NameCX292836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX292836 vs. ExPASy Swiss-Prot
Match: MGDP1_HUMAN (Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.391e-12
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   37 KTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQ 216
            K  HF+R+  +TG+PF+ M+FFDDE RNI  VSK+GVT I + NG+NL  L QGL  F++
Sbjct:  100 KITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAK 159
[Close]
BLAST of CX292836 vs. ExPASy Swiss-Prot
Match: MGDP1_MOUSE (Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   37 KTDHFQRIHSRTGVPFNSMLFFDDEDRNIDAVSKMGVTGILVGNGVNLGALRQGLTKFSQ 216
            K  HF+R+H +TGVPF+ M+FFDDE+RNI  V ++GVT I + +G++L  L QGL  F++
Sbjct:  100 KVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAK 159
The following BLAST results are available for this feature:
BLAST of CX292836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MGDP1_HUMAN2.391e-1255.00Magnesium-dependent phosphatase 1 OS=Homo sapiens ... [more]
MGDP1_MOUSE1.186e-1151.67Magnesium-dependent phosphatase 1 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionC04022B01SK FlavFr1 Citrus clementina cDNA clone C04022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292836 ID=CX292836; Name=CX292836; organism=Citrus clementina; type=EST; length=518bp
GAATTCGGCACGAGGATTTTTTCCAGTTGGTCACATAAGACCGATCACTT
CCAGAGAATTCATTCTAGAACTGGAGTTCCTTTTAACTCGATGCTCTTTT
TTGATGATGAGGATCGGAACATTGATGCGGTTTCAAAAATGGGGGTGACA
GGCATTTTGGTTGGTAATGGGGTTAATCTTGGAGCATTAAGGCAAGGTCT
TACAAAATTCTCGCAAAACTGGAATACATCTCAGAAGAACAAGCAAAAAT
GGATATCCAAGTTCTCTCAAAAGCCAGATGCATCTGAGAAGATAGACCAG
AAATGAAGAGCTCTGTATAAGGGCATTTGCTCATTCTTACACCAATTTAA
CACCCTGAAAATTGTTTCCATCGCTGTTGTGGATTATTTTGAAAATCCAG
ATCTGTTTATGAACTGATTAGTATTGTTTCTCAACGGTCAAAAAGAGTAT
GTTTTGGGCTGTTACCTTACAATATATACATTTTATACTGATTAAAATTT
AAGAGTGACTTGTATGCA
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