CX292873

Overview
NameCX292873
Unique NameCX292873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC29_ARATH (NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.546e-22
Identity = 74/183 (40.44%), Postives = 99/183 (54.10%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVS-LPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMDY----SMLSNFLSENQTSHTGSESNPL----FNSGILEQHH 524
            KATGTDK I + S      N+GVKKALVFYKGRPPKG+KT+WIMHEYRL ++ K         ++ SMRLD+WVLCRIY+K   S L        D  L E+E K  +++             T++   ++ S ++LL+ MDY    S + NF   +      SES+      FN   +  HH
Sbjct:   91 KATGTDKAIHSGS-----SNVGVKKALVFYKGRPPKGIKTDWIMHEYRLHDSRK-----ASTKRNGSMRLDEWVLCRIYKKRGASKLLNEQEGFMDEVLMEDETKVVVNEAERR-TEEEIMMMTSMKLPRTCSLAHLLE-MDYMGPVSHIDNFSQFDHLHQPDSESSWFGDLQFNQDEILNHH 261          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC18_ARATH (NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.595e-21
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSH 251
            KATGTDK +++T  G   + +GVKKALVFY G+PPKGVK++WIMHEYRL +N K  +      K +S+RLDDWVLCRIY+K++
Sbjct:   99 KATGTDKPVISTG-GGGSKKVGVKKALVFYSGKPPKGVKSDWIMHEYRLTDN-KPTHICDFGNKKNSLRLDDWVLCRIYKKNN 179          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC2_ARATH (NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.670e-18
Identity = 62/160 (38.75%), Postives = 81/160 (50.62%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMDYSMLSNFLSENQTSHTGSE 482
            KATG DK I         + +G+KKALVFY G+ PKG KTNWIMHEYRLA+  ++     +R K +S+RLDDWVLCRIY K   +          +  E  EEK  + + ++P    PP   +      +S     L   D S     +S   TS   SE
Sbjct:   89 KATGADKPI------GLPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRS-----VRKKKNSLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIMEEKPKVTEMVMP---PPPQQTSEFAYFDTSDSVPKLHTTDSSCSEQVVSPEFTSEVQSE 234          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.720e-18
Identity = 58/141 (41.13%), Postives = 71/141 (50.35%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMD 425
            KATGTDKII A         +G+KKALVFY G+ PKG KTNWIMHEYRL E+ ++           S +LDDWVLCRIY+K+  S                         + P+      H+T  N   SSS S L D +D
Sbjct:   96 KATGTDKIITADG-----RRVGIKKALVFYAGKAPKGTKTNWIMHEYRLIEHSRS---------HGSSKLDDWVLCRIYKKTSGS---------------------QRQAVTPVQACREEHST--NGSSSSSSSQLDDVLD 199          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC71_ORYSJ (NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKM-RPKDSSMRLDDWVLCRIYRKSHV 254
            KATG DK      VG+ +  + +KKALVFY G+PPKGVKTNWIMHEYRLA+  ++    K+ +   +++RLDDWVLCRIY K  V
Sbjct:   91 KATGADK-----PVGSPRA-VAIKKALVFYAGKPPKGVKTNWIMHEYRLADVDRSAAARKLSKSSHNALRLDDWVLCRIYNKKGV 169          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 53/139 (38.13%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDA 419
            KATGTDKII         + +G+KKALVFY G+ PKG KTNWIMHEYRL E  +         ++ S +LDDWVLCRIY+K                  +   +  ++D  +   R   ++ T+     SS F ++LD+
Sbjct:   96 KATGTDKII-----STEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---------RNGSTKLDDWVLCRIYKK------------------QSSAQKQVYDNGIANAREFSNNGTSSTTSSSSHFEDVLDS 202          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NA102_ARATH (NAC domain-containing protein 102 OS=Arabidopsis thaliana GN=NAC102 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRK 245
            KATG DK I         + +G+KKALVFY G+ PKG+KTNWIMHEYRLA    N++ +    K +++RLDDWVLCRIY K
Sbjct:  132 KATGADKPI------GKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRLA----NVDRSASTNKKNNLRLDDWVLCRIYNK 202          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC55_ARATH (NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.372e-17
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRK 245
            KATGTDK+I           +G+KKALVFY G+ PKG KTNWIMHEYRL E  +         ++ S +LDDWVLCRIY+K
Sbjct:   96 KATGTDKVI-----STEGRRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR---------RNGSTKLDDWVLCRIYKK 162          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC48_ORYSJ (NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIY-RKSHVSLPTSAGAAS 284
            KATG DK +         + + +KKALVFY G+ PKG KTNWIMHEYRLA+  ++        K +S+RLDDWVLCRIY +K  +  P +A  A+
Sbjct:   91 KATGADKPV------GSPKPVAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSAR------KKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAA 173          
BLAST of CX292873 vs. ExPASy Swiss-Prot
Match: NAC67_ORYSJ (NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 54/144 (37.50%), Postives = 68/144 (47.22%), Query Frame = 3
Query:    3 KATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLAENPKNLNHTKMRPKDSSMRLDDWVLCRIYRKSHVSLPTSAGAASDHDLEEEEEKFNLHDTLLPILRSPPSHNTTLNPQKSSSFSNLLDAMDYSM 434
            KATG DK +L     A     G+KKALVFY G+PP+GVKT WIMHEYRLA+               ++RLDDWVLCR+Y K                 + E EK          + +  S   T  P+     S+    MDYS+
Sbjct:   99 KATGADKPVLHNGRTA-----GIKKALVFYHGKPPRGVKTEWIMHEYRLAKK----GGAAAAAGAGALRLDDWVLCRLYNK-----------------KNEWEKMQSRKEEEEAMAAAQSWGETRTPESEVVDSDAFPEMDYSL 216          
The following BLAST results are available for this feature:
BLAST of CX292873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NAC29_ARATH5.546e-2240.44NAC domain-containing protein 29 OS=Arabidopsis th... [more]
NAC18_ARATH3.595e-2159.04NAC domain-containing protein 18 OS=Arabidopsis th... [more]
NAC2_ARATH1.670e-1838.75NAC domain-containing protein 2 OS=Arabidopsis tha... [more]
NAC72_ARATH3.720e-1841.13NAC domain-containing protein 72 OS=Arabidopsis th... [more]
NAC71_ORYSJ1.082e-1755.29NAC domain-containing protein 71 OS=Oryza sativa s... [more]
NAC19_ARATH1.082e-1738.13NAC domain-containing protein 19 OS=Arabidopsis th... [more]
NA102_ARATH1.082e-1755.56NAC domain-containing protein 102 OS=Arabidopsis t... [more]
NAC55_ARATH5.372e-1754.32NAC domain-containing protein 55 OS=Arabidopsis th... [more]
NAC48_ORYSJ3.482e-1648.42NAC domain-containing protein 48 OS=Oryza sativa s... [more]
NAC67_ORYSJ5.939e-1637.50NAC domain-containing protein 67 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC04022E06SK FlavFr1 Citrus clementina cDNA clone C04022E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292873 ID=CX292873; Name=CX292873; organism=Citrus clementina; type=EST; length=764bp
GGAAGGCGACAGGCACGGATAAGATCATCTTGGCAACATCTGTGGGAGCT
CATCAAGAAAACATTGGTGTGAAGAAAGCTCTTGTGTTCTACAAAGGCAG
GCCTCCGAAGGGAGTTAAAACTAATTGGATTATGCATGAGTATCGCCTTG
CTGAAAACCCCAAGAATCTCAATCACACCAAGATGAGGCCCAAAGACTCT
TCCATGAGGTTGGATGATTGGGTTCTCTGCCGCATCTACCGCAAGTCCCA
TGTCTCCCTGCCAACATCAGCCGGTGCAGCAAGTGATCATGATCTAGAAG
AAGAGGAGGAAAAATTTAACCTTCATGACACCCTGTTGCCGATCCTGAGA
AGTCCACCAAGCCACAACACTACTCTCAATCCTCAGAAATCTTCATCCTT
CTCCAACTTATTGGATGCAATGGACTACTCAATGCTGAGTAATTTTCTAT
CCGAGAACCAAACGAGTCATACCGGATCTGAATCCAACCCGCTGTTCAAT
TCAGGGATTTTAGAGCAGCACCATTCTTCATTCAACAATGGCAATGGCAA
TGGCGCCAACACGAACACAAGTTGCACTAACAGTTTTCTGATTCAAAAAC
TACCTCAGTTGAACTATTCAGTTTCAAACAATATGGAGAACCAGCAGCAC
AAGCGCCCACACCCAAATATAGATCATCATGAGAACATGTTGCACCCATC
AAAGAATTCATCACTACTTGCAGTTTCAGTAGTAGCACTACTGATCAATT
TGATCCTCCGTACA
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