CX293811

Overview
NameCX293811
Unique NameCX293811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15085 contig Ccv1_Contig15085:100..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.397e-78
Identity = 138/191 (72.25%), Postives = 165/191 (86.39%), Query Frame = 2
Query:    2 MATDT-VVAEHRSSNNGH-GCCAKG-PGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSEIHVK 565
            MAT+T VVA    SN G  GCC  G PGYATPL AMSGP EKL+YVT +YTGTG +KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLPSL+SGRIY +DT++NPRAPSL+K V+P +I  KTGL++PHTAHCLA+G+ILVSCLGD++GNA+GNGFLLLDS+ ++K
Sbjct:    1 MATETEVVAPVTVSNGGSKGCCKYGGPGYATPLAAMSGPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYVDPKEIADKTGLAFPHTAHCLATGEILVSCLGDEEGNAKGNGFLLLDSDFNIK 191          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.559e-60
Identity = 107/172 (62.21%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++  K GL+ PHT+HCL  G+I++S LGD  GN +G GF+LLD E   VKG
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVVDVGSDPRAPRIHKTVEPYEVFWKCGLANPHTSHCLGCGEIMISSLGDPCGNGKG-GFVLLDGETFEVKG 174          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.492e-59
Identity = 106/172 (61.63%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C   GPGYATPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LPS++S RIYVVD    PRAP LHKV+EP +I  K  L   HT+HCLASG++++S LGD  GN +G GF+LLD E   VKG
Sbjct:    5 CTKCGPGYATPLEAMKGPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVVDVGSEPRAPKLHKVIEPNEIHAKCNLGNLHTSHCLASGEVMISSLGDPQGNGKG-GFVLLDGETFEVKG 175          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 3.255e-59
Identity = 107/172 (62.21%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRAP LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD E   VKG
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDGETFEVKG 175          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.251e-59
Identity = 108/172 (62.79%), Postives = 132/172 (76.74%), Query Frame = 2
Query:   59 CAK-GPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C K GPGY +PL+AM GPRE+L+Y+ C+Y  TG E PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LPSL+S R+YVVD    PRAP LHKVVEP +I  K  LSY HT+HCLASG++++S LGD  GN +G GF+LLD E   VKG
Sbjct:    5 CGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEIHAKCDLSYLHTSHCLASGEVMISALGDPRGNGKG-GFVLLDGETFEVKG 175          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 5.553e-59
Identity = 105/172 (61.05%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++VS LGD  GN +G+ F+LLD E   VKG
Sbjct:    5 CTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGKGS-FVLLDGETFEVKG 175          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.237e-58
Identity = 104/172 (60.47%), Postives = 130/172 (75.58%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C   GPGY TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++V+ LGD  GN +G+ F+LLD E   VKG
Sbjct:    5 CTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSHCLASGEVMVNTLGDLQGNGKGS-FVLLDGETFEVKG 175          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.616e-58
Identity = 105/172 (61.05%), Postives = 130/172 (75.58%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+YVVD   +PRAP LHK VEP ++  K GL+  HT+HCL  G+I++S LGD  GN +G GF+LLD E   VKG
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVVDVGTDPRAPRLHKTVEPHEVYWKCGLANLHTSHCLGCGEIMISALGDPCGNGKG-GFVLLDGETFEVKG 174          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.599e-58
Identity = 106/172 (61.63%), Postives = 131/172 (76.16%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-IHVKG 568
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRA  LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD+E   VKG
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRALKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDAETFEVKG 175          
BLAST of CX293811 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.018e-58
Identity = 101/166 (60.84%), Postives = 126/166 (75.90%), Query Frame = 2
Query:   56 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE 553
            C   GPGY TPLDAM GPRE+++Y+ C+Y  T  +KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIYVVD   +PRAP LHK VEP D+  K GL+ PHT+HCL SG I++S +GD  GN +G GF+LLD E
Sbjct:    5 CSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKG-GFVLLDGE 169          
The following BLAST results are available for this feature:
BLAST of CX293811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH2.397e-7872.25Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1A_XENLA6.559e-6062.21Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_RAT2.492e-5961.63Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_HUMAN3.255e-5962.21Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_BOVIN4.251e-5962.79Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_MOUSE5.553e-5961.05Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP2_MOUSE1.237e-5860.47Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1B_XENLA1.616e-5861.05Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_PONAB3.599e-5861.63Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_DANRE8.018e-5860.84Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]

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Properties
Property NameValue
Genbank descriptionC04035H06SK FlavFr1 Citrus clementina cDNA clone C04035H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293811 ID=CX293811; Name=CX293811; organism=Citrus clementina; type=EST; length=570bp
AATGGCAACTGATACTGTGGTGGCTGAACACCGGTCGAGCAATAATGGGC
ATGGTTGCTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATG
TCTGGTCCTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTAC
TGGAAGAGAGAAGCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCT
CTTCTTCTTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGT
GATGAACTACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGA
TTCATCTGCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTC
GTATATACGTAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCAT
AAAGTTGTTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCC
TCACACGGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTG
GAGATAAGGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCA
GAAATTCATGTGAAAGGAAG
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