CX293837

Overview
NameCX293837
Unique NameCX293837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293837 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.430e-35
Identity = 83/185 (44.86%), Postives = 115/185 (62.16%), Query Frame = 3
Query:   36 NLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHSNTKCSN-KVPSSSFSIKCGGTQIASASGIEFDDDSQTLEAASFYTSSGNQWAVSNTGNFISSPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLKNGKYRIDLHFAEITMEDSLS--WKGLGRR 581
            +L  +DVSYN LSG+LP   +   L++N++ ++     L D + L  + CL  N  C+  K   S FSI CGG +I S +   F+ + + L  ASF  S+G +WA S+ G F  S N  +YI+ + SQ   TLDSEL+++AR+S SSLRYYGLGL+NG Y + L FAEI +  S S  W+GLGRR
Sbjct:  361 SLSNVDVSYNDLSGSLPSWVSLPNLNLNLVANNFTLEGL-DNRVLSGLNCLQKNFPCNRGKGIYSDFSINCGGPEIRSVTEAVFEREDEDLGPASFVVSAGQRWAASSVGLFAGSSNN-IYISTSQSQFVNTLDSELFQSARLSASSLRYYGLGLENGGYTVTLQFAEIQILGSTSNTWRGLGRR 543          
BLAST of CX293837 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.479e-35
Identity = 81/181 (44.75%), Postives = 112/181 (61.88%), Query Frame = 3
Query:   48 LDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHSNTKCSN-KVPSSSFSIKCGGTQIASASGIEFDDDSQTLEAASFYTSSGNQWAVSNTGNFISSPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLKNGKYRIDLHFAEITM--EDSLSWKGLGRR 581
            +DVSYN LSG+LP   +   L +N++ ++     L D + L  + CL  N  C+  K   S FSI CGG +  S +G  F+ + +    ASF+ S+G +WA S+ G F  S N  +YIA + SQ   TLDSEL+++AR+S SS+RYYGLGL+NG Y + L FAEI +    S +WKGLGRR
Sbjct:  366 VDVSYNDLSGSLPSWVSLPSLKLNLVANNFTLEGL-DNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVTGALFEREDEDFGPASFFVSAGQRWAASSVGLFAGSSNN-IYIATSQSQFVNTLDSELFQSARLSASSVRYYGLGLENGGYTVTLQFAEIQILGSTSTTWKGLGRR 544          
BLAST of CX293837 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 3
Query:   48 LDVSYNPLSGNLPRNFAKGGLSMNVIGS--SINANNLQDGKALGMMQCLHSNTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSQTLEAASFYTSSGNQWAVSNTGNFISSPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLKNGKYRIDLHFAEITMEDSLSWKGLGRRV 584
            +D+SYN  +   P   +   L +N+I S  S+  N++Q         CL  +  C      SS  I CGG ++      E+ DD      AS ++S   +W  S++G ++ + +G  Y+A     +      E YKTAR++  SL+YYGL ++ G Y++ L+FAEI   +  ++  LGRR+
Sbjct:  355 IDLSYNNFTQ--PPTLSCNQLDVNLISSYPSVTNNSVQ--------WCLRKDLPCPGDAHHSSLFINCGGNRL-KVDKDEYADDLNK-RGASTFSSVSERWGYSSSGAWLGN-DGATYLATDTFNLINESTPEYYKTARLASQSLKYYGLCMRRGSYKVQLYFAEIMFSNDQTYSSLGRRL 522          
BLAST of CX293837 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 57/181 (31.49%), Postives = 88/181 (48.62%), Query Frame = 3
Query:   48 LDVSYNPLSGNLPRNFAKGGLSMNVIGS--SINANNLQDGKALGMMQCLHSNTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSQTLEAASFYTSSGNQWAVSNTGNFISSPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLKNGKYRIDLHFAEITMEDSLSWKGLGRRV 584
            LD+S N  +   P   +   L +N+I S  S+  N++Q         CL     C      SS  I CGG+++        DD +      S ++S   +W  S++G ++   +   Y+A     +      E YKTAR+SP SL+YYGL L+ G Y++ LHFAEI   +  ++  LGRR+
Sbjct:  357 LDLSDNNFTQ--PPTLSCNQLDVNLISSYPSVTDNSVQ--------WCLREGLPCPEDAKQSSLFINCGGSRLKIGKDTYTDDLNS--RGQSTFSSVSERWGYSSSGVWLGKEDAG-YLATDRFNLINGSTPEYYKTARLSPQSLKYYGLCLRRGSYKLQLHFAEIMFSNDQTFNSLGRRI 524          
BLAST of CX293837 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 58/187 (31.02%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   48 LDVSYNPLS--GNLPRNFAKGGLSMNVIGSSINANNLQDGKA--LGMMQCLHSNTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSQTLEAASFYTSSGNQWAVSNTGNFISSPN-GPLYIAQTDSQITGTLDSE---LYKTARISPSSLRYYGLGLKNGKYRIDLHFAEITMEDSLSWKGLGRRV 584
            +DVS+N  +   ++P +     ++ N++ S    N    G    L  M C+H       K+      I CGG ++     I +  D +   A+ +   +  +WA+S+TGNF+ + +    Y  Q  S+++    S    LY+TAR+SP SL YYG+ L NG Y ++LHFAEI   D  +   LG+R+
Sbjct:  356 VDVSFNNFTDESSIPSHDCNR-VTSNLVESFALGNKSHKGSTCFLQRMPCVHPKRYHLYKL-----YINCGGGEVKVDKEITYQADDEPKGASMYVLGANKRWALSSTGNFMDNDDDADEYTVQNTSRLSVNASSPSFGLYRTARVSPLSLTYYGICLGNGNYTVNLHFAEIIFTDDNTLYSLGKRL 536          
BLAST of CX293837 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 62/201 (30.85%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   48 LDVSYNPLSGNLPR---NFAKGG---LSMNVIGSSINANNLQDGKALGMMQCLHS----NTKCS-NKVPS-----------SSFSIKCGGTQIASASGIEFDDDSQTLEAASFYTSSGNQWAVSNTGNFISSPNGPLYIA-QTDSQITGTLDSELYKTARISPSSLRYYGLGLKNGKYRIDLHFAEITMEDSLSWKGLGRR 581
            LD+S+N LSG +P    N   GG    + N++  S+    +  G  + +     S    N  C  N V S           ++  I CGG +++    I   D    LE+   +  S N W  +N G F+   + P  +  +++S     +D  LY  ARIS  SL YY L L+NG Y ++LHFAEI    + +++ LGRR
Sbjct:  283 LDLSFNKLSGAIPNTYINLRDGGYIYFTGNMLNGSVPDWMVNKGYKIDLSYNNFSVDPTNAVCKYNNVLSCMRNYQCPKTFNALHINCGGDEMSINGTIYESDKYDRLES---WYESRNGWFSNNVGVFVDDKHVPERVTIESNSSELNVVDFGLYTQARISAISLTYYALCLENGNYNVNLHFAEIMFNGNNNYQSLGRR 480          
BLAST of CX293837 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 55/188 (29.26%), Postives = 89/188 (47.34%), Query Frame = 3
Query:   42 IALDVSYNPLSGNLPRNFA---KGGLSMNVIGSSINANNLQDGKALGMMQCLHSNTKCSNKVPSSSFSIKCGGTQ--IASASGIEFDDDSQTLE--AASFYTSSGNQWAVSNTGNFISSPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLKNGKYRIDLHFAEITMEDSLSWKGLGRRV 584
            I +D+SYN L    P + A      L++N+  S+         K+   + C+  + KC     SS   + CGG+   +      E  +    +E  AA ++      W  S+TG+F+   N      +    +  +  S+LYK+ARI+P SL Y+   L+NG Y I+L FAEI   +  ++  LGRR+
Sbjct:  361 ITVDLSYNNLKWQSPESRACRPNMNLNLNLFQSTSTK------KSSKFLPCI-KDFKCPRY--SSCLHVNCGGSDMYVKEKKTKELYEGDGNVEGGAAKYFLKPDANWGFSSTGDFMDDNN--FQNTRFTMFVPASNQSDLYKSARIAPVSLTYFHACLENGNYTINLDFAEIRFTNDENYNRLGRRL 537          
The following BLAST results are available for this feature:
BLAST of CX293837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y5614_ARATH3.430e-3544.86Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH4.479e-3544.75Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH3.225e-1730.94Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH5.501e-1731.49Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH2.090e-1631.02Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH1.656e-1330.85Probable LRR receptor-like serine/threonine-protei... [more]
RKF1_ARATH1.550e-1129.26Probable LRR receptor-like serine/threonine-protei... [more]
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Properties
Property NameValue
Genbank descriptionC05001D04SK FlavSen1 Citrus clementina cDNA clone C05001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293837 ID=CX293837; Name=CX293837; organism=Citrus clementina; type=EST; length=584bp
GCACGAGGGAGTTGCCGGTGAATATCATAGCTCCAAATCTCATTGCATTA
GACGTCTCATACAATCCCCTATCTGGAAATTTGCCTCGTAATTTTGCCAA
AGGAGGATTATCAATGAATGTTATCGGAAGTTCTATCAATGCAAATAATT
TGCAGGATGGGAAGGCTTTAGGAATGATGCAGTGTCTCCACAGCAATACC
AAGTGCAGCAACAAAGTTCCATCCTCTTCATTTTCTATCAAGTGCGGAGG
CACACAAATAGCATCAGCATCTGGCATTGAATTTGATGACGACTCACAAA
CTCTGGAAGCTGCCTCATTTTACACGAGCTCTGGTAACCAATGGGCAGTA
AGCAACACGGGGAATTTCATCTCAAGCCCAAATGGACCCCTATATATAGC
ACAAACAGATTCTCAAATCACAGGGACATTAGATTCTGAGCTGTACAAGA
CAGCAAGGATCTCTCCGAGCTCACTGAGGTACTATGGCCTCGGTTTAAAG
AATGGGAAATACAGGATTGATCTTCACTTTGCAGAGATAACAATGGAGGA
CTCGCTGTCCTGGAAAGGTCTAGGAAGGCGTGTA
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