CX293843

Overview
NameCX293843
Unique NameCX293843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:111..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.376e-45
Identity = 97/120 (80.83%), Postives = 104/120 (86.67%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQDDE-XVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTYI FGEAKIEDLSSQLQTQAAEQFK   PN  +V  KPESS   Q+DE  VD+TGVEPKDIELVMTQAGV R++AVKAL
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKA--PNLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKAL 189          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.797e-45
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESS--AMVQDDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ+Q+QAAEQFK   P+  NV SK ESS  A+VQDDE VDE GVEPKDIELVMTQAGV R  AVKAL
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKA--PDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKAL 187          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.287e-43
Identity = 99/126 (78.57%), Postives = 105/126 (83.33%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESS-----AMVQ--DDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQLQ+QAAEQFK   PN  NV S+ E+S     A VQ  DDE VDE GVEPKDIELVMTQAGV + RAVKAL
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKA--PNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAVKAL 188          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.598e-39
Identity = 82/125 (65.60%), Postives = 103/125 (82.40%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSA------MVQDDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++FGEAKIEDLSSQLQTQAA+QF++  P  G  + + E+S       + +D+E +DETGVE +DI+LVMTQAGV RS+AVKAL
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRM--PEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKAL 201          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.739e-38
Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPP-----PNT-GNVASKPESSAMVQDDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEAKI+D+SSQLQ QAA++FK+P      PNT G+ A+        +DDE VDETGVE KDI+LVMTQAGV R +AVKAL
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEE--EDDEDVDETGVEAKDIDLVMTQAGVSRPKAVKAL 196          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.793e-36
Identity = 75/124 (60.48%), Postives = 102/124 (82.26%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPP-----PNTGNVASKPESSAMVQDDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEAK++DLSSQLQTQAA++FK+P      PN G+ A+     A  +D++ VD+TGVE +DI+LVMTQAGV +++AV AL
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATM-APLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSAL 193          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.755e-35
Identity = 76/121 (62.81%), Postives = 95/121 (78.51%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQ--DDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKVP     NV    ++  + +  ++E VDETGVE KDIELVM+QA V R++AV+AL
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRAL 199          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.151e-34
Identity = 74/126 (58.73%), Postives = 94/126 (74.60%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP-------PPNTGNVASKPESSAMVQDDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AM KLG++ I GV+R+T++KSKNILFVI+KPDVFKSP SDTY+VFGEAKIEDLS Q+   AAE+FKVP       P  +     +PE     ++DE V+E G+EP+DIELVM QA V R++AV+AL
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRAL 1488          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.081e-34
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQ--DDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKV      N+    ++  + +  ++E VDETGVE KDIELVM+QA V R++AV+AL
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRAL 198          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.081e-34
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQ--DDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKV      N+    ++  + +  ++E VDETGVE KDIELVM+QA V R++AV+AL
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRAL 199          
The following BLAST results are available for this feature:
BLAST of CX293843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA_PINTA1.376e-4580.83Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.797e-4581.82Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH1.287e-4378.57Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH5.598e-3965.60Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH4.739e-3867.20Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH5.793e-3660.48Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI3.755e-3562.81Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE4.151e-3458.73NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA_XENTR7.081e-3461.16Nascent polypeptide-associated complex subunit alp... [more]
NACA_MOUSE7.081e-3461.16Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC05001E06SK FlavSen1 Citrus clementina cDNA clone C05001E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293843 ID=CX293843; Name=CX293843; organism=Citrus clementina; type=EST; length=537bp
CGCTGCCCATCTTGAAGAGCAAAAGCTCAACCCCGATGAGCCTGTAGTCG
AGGACGACGATNATGAGGATGATGATGAGGAGGATGAGGATGATGACAAG
GATGAAGACGATGTGGAAGGGAAAGGAGATGGAAGTGGTCGCTCAAAACA
GAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGTTGAAACTTGGAATGA
AGCCAATCCCTGGCGTCAGTCGAGTTACAGTTAAAAAGAGCAAAAATATT
TTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAGTCCTACATCTGACAC
ATACATTGTCTTTGGGGAAGCAAAGATCGAGGATCTGAGTTCACAACTGC
AAACTCAGGCTGCAGAGCAGTTCAAGGTCCCTCCTCCTAACACAGGTAAT
GTGGCATCAAAGCCTGAGTCATCGGCCATGGTTCAAGATGACGAANAAGT
AGATGAGACTGGTGTGGAGCCAAAGGACATTGAGTTGGTAATGACTCAAG
CTGGGGTACCGAGGTCAAGGGCTGTGAAAGCACTCAA
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