CX293845

Overview
NameCX293845
Unique NameCX293845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10123 contig Ccv1_Contig10123:142..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.434e-31
Identity = 79/150 (52.67%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  150 MDRQGHGGQPTSMGLVGSGAQVPYGTNPYQQNQMAGGPNPGPAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNHT 599
            MD+Q HG          SGA + YGTNPYQ N M+         T+       +QPG                           +FW NQ++EIEK  DFKNHSLPLARIKKIMKAD DVRMISAEAPV+FARACEMFILELTLRSWNHT
Sbjct:    1 MDQQDHGQ---------SGA-MNYGTNPYQTNPMS--------TTAATVAGGAAQPG------QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHT 126          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.675e-29
Identity = 71/136 (52.21%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  198 GSGAQVPYGTNPYQQNQMAGGPNPG--PAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNHT 599
            G  + + YG+NPYQ N M   P     PA   +   Q                                 SFW  Q++EIEK  DFKNHSLPLARIKKIMKAD DVRMISAEAPV+FARACEMFILELTLRSWNHT
Sbjct:    5 GQSSAMNYGSNPYQTNAMTTTPTGSDHPAYHQIHQQQQQQ------------------------LTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHT 116          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 3
Query:  405 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNHT 599
            FWANQ QEIE   DFKNH+LPLARIKKIMKAD DVRMISAEAPVIFA+ACEMFILELTLR+W HT
Sbjct:   58 FWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHT 122          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.693e-24
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  405 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNH 596
            FW  Q QEIE+VNDFKNH LPLARIKKIMKAD DVRMISAEAP++FA+ACE+FILELT+RSW H
Sbjct:   60 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLH 123          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.693e-24
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  405 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNH 596
            FW  Q QEIE+VNDFKNH LPLARIKKIMKAD DVRMISAEAP++FA+ACE+FILELT+RSW H
Sbjct:   47 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLH 110          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.614e-20
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  402 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNHT 599
            SFW++Q ++I K  DFK H LPLARIKKIMK+D DV  IS+EAP++FA+ACE+ ILE+T RSW HT
Sbjct:  251 SFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHT 316          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.368e-18
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  402 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSW 590
            ++W  Q   +E V+DFKN  LPLARIKKIMKAD DV M+SAEAP+IFA+ACEMFI++LT+RSW
Sbjct:   38 NYWIEQ---METVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSW 97          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: HAP5_YEAST (Transcriptional activator HAP5 OS=Saccharomyces cerevisiae GN=HAP5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  405 FWANQYQEIEKVN--------DFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSW 590
            +W     EIE  N        DFK+HSLP ARI+K+MK D DV+MISAEAP+IFA+ACE+FI ELT+R+W
Sbjct:  133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAW 202          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.216e-16
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  402 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNHT 599
            SFW    +EI    V DF+   LPLARIKKIMK D DV+MISAEAPV+FA+A ++FI ELTLR+W HT
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHT 88          
BLAST of CX293845 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.216e-16
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  402 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADXDVRMISAEAPVIFARACEMFILELTLRSWNHT 599
            SFW    +EI    V DF+   LPLARIKKIMK D DV+MISAEAPV+FA+A ++FI ELTLR+W HT
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHT 88          
The following BLAST results are available for this feature:
BLAST of CX293845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NFYC9_ARATH5.434e-3152.67Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH8.675e-2952.21Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC2_ARATH6.874e-2686.15Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC4_ARATH1.693e-2481.25Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC1_ARATH1.693e-2481.25Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC_DICDI9.614e-2065.15Nuclear transcription factor Y subunit gamma OS=Di... [more]
NFYC6_ARATH2.368e-1868.25Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
HAP5_YEAST5.832e-1758.57Transcriptional activator HAP5 OS=Saccharomyces ce... [more]
NFYC_RAT2.216e-1663.24Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB2.216e-1663.24Nuclear transcription factor Y subunit gamma OS=Po... [more]

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Properties
Property NameValue
Genbank descriptionC05001E08SK FlavSen1 Citrus clementina cDNA clone C05001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293845 ID=CX293845; Name=CX293845; organism=Citrus clementina; type=EST; length=599bp
GAGAAAAAAAAAAATCCCTTGATTCTCTCAAAACCCTAAAAGGGGAAGGT
TATATTTTCCAAAATCGGATCTTTTTATTTCATTCTCTCACTGGGTTTCA
ATCTGGGTGAAGGAGGAAAAAGCAAAAGAATCAGAAAAGTTGGATTAGTA
TGGATCGGCAAGGACACGGTGGACAACCCACATCTATGGGGTTGGTTGGT
AGTGGAGCTCAAGTGCCATACGGCACAAACCCGTATCAGCAGAATCAAAT
GGCTGGCGGTCCCAACCCTGGCCCAGCTGTCACATCAGTCGGGGCAATTC
AATCTACTAGTCAGCCAGGAGGTGCTCAGCTTGCACAACACCAACTTGCC
TATCAACAAATTCATCACCAGCAGCAACAGCAGCTTCAGCAACAACTCCA
GTCTTTTTGGGCCAATCAGTACCAAGAAATTGAAAAGGTTAATGATTTCA
AGAATCATAGCCTTCCTTTAGCAAGGATCAAGAAAATCATGAAGGCCGAT
NAGGATGTGAGAATGATATCAGCTGAGGCACCTGTTATATTTGCAAGGGC
ATGTGAAATGTTCATCTTGGAATTGACGCTGCGTTCCTGGAACCACACT
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