CX293848

Overview
NameCX293848
Unique NameCX293848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.967e-52
Identity = 89/147 (60.54%), Postives = 119/147 (80.95%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT VLL WT +LLSKH +WQERAR+EVLQ FG NKP++  LNHLK V MILYEVLRLYPP+  L++ V K+TKLG+ T+PAG Q+ LP +++H++  +WG+DA+EF P RF +G++ A KN V+Y PF+ GPR+C+GQNFAL++AK+
Sbjct:  336 TTGVLLTWTTILLSKHPEWQERAREEVLQAFGKNKPEFERLNHLKYVSMILYEVLRLYPPVIDLTKIVHKDTKLGSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFNPMRFVDGVANATKNNVTYLPFSWGPRVCLGQNFALLQAKL 482          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AO_SHEEP (Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 50/149 (33.56%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ + +L+ H D Q++ ++E+   F N  P  Y  L  ++ + M++ E LR++P    L R   K+ ++  +++P G  + +P+ ++H+DP+LW  +  EF+PERF++  +K + N   Y PF +GPR C+G  FA++  K+A
Sbjct:  309 TTSNTLSFLLYILATHPDVQQKLQEEIDATFPNKAPPTYDVLAQMEYLDMVVNETLRMFPIAVRLDRLCKKDVEIHGVSIPKGTAVTVPIFVLHRDPQLW-PEPEEFRPERFSKK-NKDSINPYVYLPFGTGPRNCIGMRFAIMNMKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 54/149 (36.24%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L+     L+ H D Q++ ++E+   F N  P  Y  L  ++ + M++ E LRLYP    L RA  K+ ++  + +P G  + +P+ ++H+DP+LW  +  EF+PERF++   K   N  +Y PF +GPR C+G  FAL+  K+A
Sbjct:  309 TTSSALSLLAYELATHPDVQQKLQEEIEATFPNKAPPTYDALAQMEYLDMVVNETLRLYPIAARLERACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLW-PEPEEFRPERFSKK-HKDTINPYTYLPFGTGPRNCIGMRFALMNMKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A1_CAEEL (Putative cytochrome P450 CYP13A1 OS=Caenorhabditis elegans GN=cyp-13A1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 54/148 (36.49%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYP-PLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT++ L++   LL+ H + Q++ ++EV +   N +    +L+ LK ++ +  E LRLYP    A SR  ++ TKLGN+ +  G  I +    +H DP +WGDDA +FKPER+    S     +  Y PF  GPR C+G   A +E K+
Sbjct:  330 TTALSLSYATYLLATHPEIQKKLQEEVNRECPNPEVTIDQLSKLKYMECVFKEALRLYPLGAFANSRRCMRNTKLGNMKVEVGTMIQVDTWTLHTDPNIWGDDAEDFKPERWQTPNSDQIYQKSGYIPFGLGPRQCIGMRLAYMEEKI 477          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A2_CAEEL (Putative cytochrome P450 CYP13A2 OS=Caenorhabditis elegans GN=cyp-13A2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 51/148 (34.46%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLT-ALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT++ L++   LL+ +   QE+  +E+ + FG ++ ++ +L  LK +  ++ E LRLYP  + + SR  +K T +  + + AGV + +    +H DPELWG+D  EFKPER++    +  +++ +Y PF  GPR C+G   A++E K+
Sbjct:  327 TTALSLSYVTYLLAVNPKIQEKVIEEIAREFGTSEVEFEKLGRLKYMDCVIKEALRLYPLASISNSRKCMKTTTVNGVKIEAGVYVQMDTWSLHYDPELWGEDVKEFKPERWS--TDEPLEHKGAYLPFGLGPRQCIGMRLAIMEQKI 472          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNK-PDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ M  L+ H D Q++ ++E+   F N   P Y  L  ++ + M+L E LRLYP    L R   K+ ++  + +P G  + +P   +H+D  LW  +  EF+PERF+   +K + N  +Y PF +GPR C+G  FA++  K+A
Sbjct:  309 TTSTSLSFLMYELATHPDVQQKLQEEIDATFPNKALPTYDALVQMEYLDMVLNETLRLYPIAGRLERVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLW-PEPEEFRPERFSRK-NKDSINPYTYLPFGTGPRNCIGMRFAIMNMKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.223e-21
Identity = 53/152 (34.87%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTAL-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATGN 453
            TT++ L+++  LL+ H + Q++ ++EV +   + +  + +L+ LK ++ ++ E LRLYP  + + +R  LK T +  + + AG  I +    +H DP++WGDD  EFKPER+  G  +    +  Y PF  GPRIC+G   A++E KM   N
Sbjct:  330 TTALSLSYSSYLLATHPEIQKKLQEEVDRECPDPEVTFDQLSKLKYLECVVKEALRLYPLASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESG-DELFFAKGGYLPFGMGPRICIGMRLAMMEMKMLLTN 480          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 51/149 (34.23%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS +L++T+  L+ H D Q++ ++E+ +   N  P  Y  +  ++ + M+L E LRLYP    L R   K+ ++  + +P G  + +P  ++H DP+ W  +  EF+PERF++  +K + +   Y PF +GPR C+G  FAL+  K+A
Sbjct:  310 TTSSILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDTVMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHW-PEPEEFQPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLA 456          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13B1_CAEEL (Putative cytochrome P450 cyp-13B1 OS=Caenorhabditis elegans GN=cyp-13B1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 55/149 (36.91%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLT-ALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TT+  L +   LL+KH +  + A++EV  V G+    Y ++  LK +  ++ E LRLYP    A SR  +K T LG++ +  GV+I   ++ +H+  E+WG++A +F PER+ E    ++++ +S+ PF +GPR CVG    L EAK A
Sbjct:  324 TTANSLAYASYLLAKHPEKMKLAQEEVDTVVGSENVSYDDMTKLKYLDAVVRESLRLYPVAWFACSRECVKPTTLGDIYIDKGVKIEADVMSLHRSKEIWGENADDFVPERWLE---PSSRHTMSWIPFGAGPRQCVGMRLGLSEAKTA 469          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 51/149 (34.23%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ +  L+ H D Q++ ++E+   F N  P  Y  L  ++ + M++ E LR++P    L R   K+ ++  +++P G  + +P+ ++H +PE W  +  EF+PERF++  +K   N   Y PF +GPR CVG  FAL+  K+A
Sbjct:   20 TTSTSLSFIIYELATHPDVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFPIAGRLERLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFW-PEPEEFRPERFSKK-NKDGINPYVYLPFGTGPRNCVGMRFALMNIKLA 166          
The following BLAST results are available for this feature:
BLAST of CX293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
C72A1_CATRO1.967e-5260.54Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP3AO_SHEEP6.170e-2233.56Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2... [more]
CP3AT_PIG8.059e-2236.24Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]
C13A1_CAEEL8.059e-2236.49Putative cytochrome P450 CYP13A1 OS=Caenorhabditis... [more]
C13A2_CAEEL2.345e-2134.46Putative cytochrome P450 CYP13A2 OS=Caenorhabditis... [more]
CP3AC_CANFA3.999e-2135.57Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
C13A7_CAEEL5.223e-2134.87Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
CP3AG_MOUSE6.822e-2134.23Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
C13B1_CAEEL6.822e-2136.91Putative cytochrome P450 cyp-13B1 OS=Caenorhabditi... [more]
CP3AJ_CAPAE1.164e-2034.23Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001E11SK FlavSen1 Citrus clementina cDNA clone C05001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293848 ID=CX293848; Name=CX293848; organism=Citrus clementina; type=EST; length=477bp
ACTACCTCTGTTTTGCTTAATTGGACAATGGTCTTATTGAGCAAGCATCA
AGATTGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATA
ATAAGCCCGACTATGGTGAATTGAACCACCTCAAAATTGTCCAGATGATA
CTTTACGAGGTACTCAGGCTTTATCCGCCCTTAACTGCGCTTAGTCGAGC
TGTTCTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTC
AAATTGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGT
GACGATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAA
GGCGGCAAAAAATCAAGTTTCATATTTCCCATTCGCATCGGGTCCTAGGA
TATGTGTTGGACAAAATTTTGCTCTAGTAGAAGCAAAAATGGCCACCGGC
AATGATTCTTCAAAACTACTCATTCGA
back to top