CX293875

Overview
NameCX293875
Unique NameCX293875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_ARATH (Probable phenylalanyl-tRNA synthetase alpha chain OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3)

HSP 1 Score: 289.656 bits (740), Expect = 5.586e-78
Identity = 141/172 (81.98%), Postives = 149/172 (86.63%), Query Frame = 3
Query:    3 NYAPKRKKVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            NYAP+RKKVATDLTRENLQ  +WKELEFKEYNF AKG P + GHLH LLKVRKQ KDIF+QMGFEEMPTNN+VESSFWNFDALFQPQQHPARDSHDTFFL+ PSTTR LPEDYVERVKRVHE           +WKREEANKNLLRTHTTAVSSRML ALA+KPF PKKYFS
Sbjct:  171 NYAPERKKVATDLTRENLQ--NWKELEFKEYNFKAKGAPVDAGHLHALLKVRKQFKDIFVQMGFEEMPTNNYVESSFWNFDALFQPQQHPARDSHDTFFLKVPSTTRTLPEDYVERVKRVHESGGYGSRGYNYDWKREEANKNLLRTHTTAVSSRMLYALAQKPFVPKKYFS 340          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFAB_XENLA (Phenylalanyl-tRNA synthetase alpha chain B OS=Xenopus laevis GN=farsa-B PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.339e-55
Identity = 104/166 (62.65%), Postives = 120/166 (72.29%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKYFS 518
            K  TDLT E +  G W+E +FK YNFNA G   E GHLHPLLKVR Q + IFL+MGF EMPTNNF+ESSFWNFDALFQPQQHPARD HDTFFL++P+   E P +Y+ERVK+VH            +W   EA KN+LRTHTTAVS+RML  LA +K F P KYFS
Sbjct:  188 KQETDLTPEMIASGSWREKQFKGYNFNALGVMPECGHLHPLLKVRTQFRQIFLEMGFTEMPTNNFIESSFWNFDALFQPQQHPARDQHDTFFLQDPALATEFPMEYLERVKKVHSEGGYGSQGYKYDWSIHEAQKNILRTHTTAVSARMLYKLAHQKEFTPVKYFS 353          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_DANRE (Phenylalanyl-tRNA synthetase alpha chain OS=Danio rerio GN=farsa PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.748e-55
Identity = 102/166 (61.45%), Postives = 121/166 (72.89%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKYFS 518
            K  T+LT E +  G+WKE +FK YNF A G   + GHLHPL+KVR Q + IFL+MGF EMPTNNF+ESSFWNFD+LFQPQQHPARD HDTFF+ +P+   E P DY+ERVK+VH            +WK EEA KNLLRTHTTAVS+RML  LA ++ F P KYFS
Sbjct:  187 KQETELTPEMIASGNWKEKKFKPYNFEAMGVAPDCGHLHPLMKVRTQFRQIFLEMGFTEMPTNNFIESSFWNFDSLFQPQQHPARDQHDTFFISDPALAHEFPRDYLERVKKVHSEGGYGSQGYKYDWKIEEAQKNLLRTHTTAVSARMLYKLAQQEKFTPVKYFS 352          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFAA_XENLA (Phenylalanyl-tRNA synthetase alpha chain A OS=Xenopus laevis GN=farsa-A PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.087e-55
Identity = 103/166 (62.05%), Postives = 120/166 (72.29%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKYFS 518
            K  TDLT E +  G W+E +FK YNF+A G   E GHLHPLLKVR Q + IFL+MGF EMPTNNF+ESSFWNFDALFQPQQHPARD HDTFFL++P+   E P +Y+ERVK+VH            +W   EA KN+LRTHTTAVS+RML  LA +K F P KYFS
Sbjct:  188 KQETDLTPEMIASGSWREKQFKGYNFDALGVMPECGHLHPLLKVRTQFRQIFLEMGFTEMPTNNFIESSFWNFDALFQPQQHPARDQHDTFFLQDPALATEFPMEYLERVKKVHSEGGYGSQGYKYDWSIHEAQKNILRTHTTAVSARMLYKLALQKDFTPVKYFS 353          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_DROME (Probable phenylalanyl-tRNA synthetase alpha chain OS=Drosophila melanogaster GN=CG2263 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 6.644e-55
Identity = 104/173 (60.12%), Postives = 124/173 (71.68%), Query Frame = 3
Query:    6 YAPKRKKVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALA--EKPFAPKKYFS 518
            +A    K+ TDLT E L  G W +L+FK YNF+A G P   GHLHPLLKVR + + IFL+MGF EMPTNN+VESSFWNFDAL+QPQQHPARD+HDTFF+  P+ + + P+DY+ERVK+VH            +WK EEA KNLLRTHTTAVS+RML  LA  E  F   KYFS
Sbjct:  180 FATTLTKLETDLTVEMLANGLWDQLKFKAYNFDALGAPPTRGHLHPLLKVRTEFRQIFLEMGFSEMPTNNYVESSFWNFDALYQPQQHPARDAHDTFFVNHPAKSHKFPQDYLERVKKVHSVGGYGSKGYGYDWKLEEAQKNLLRTHTTAVSARMLYKLANQEGGFKAAKYFS 352          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_CHICK (Phenylalanyl-tRNA synthetase alpha chain OS=Gallus gallus GN=FARSA PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.297e-54
Identity = 103/163 (63.19%), Postives = 119/163 (73.01%), Query Frame = 3
Query:   33 TDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEK-PFAPKKYFS 518
            TDLT E +  G W++L FK YNF+A G P   GHLHPLLKVR QL+ IFL+MGF EMPT+NFVESSFWNFDALFQPQQHPARD HDTFFL++P+   ELP +Y+ RVK+VH            EWK EEA KNLLRTHTT+ S+R L  LA +  F P KYFS
Sbjct:  193 TDLTPEMIATGSWRKLPFKAYNFSALGLPPTCGHLHPLLKVRSQLRQIFLEMGFTEMPTDNFVESSFWNFDALFQPQQHPARDQHDTFFLQDPAEAPELPANYMARVKKVHSQGGYGSQGYKYEWKVEEARKNLLRTHTTSASARALYHLARQGKFTPVKYFS 355          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_RAT (Phenylalanyl-tRNA synthetase alpha chain OS=Rattus norvegicus GN=Farsa PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.307e-54
Identity = 100/166 (60.24%), Postives = 118/166 (71.08%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAE-KPFAPKKYFS 518
            K   +L+ E +  G W++  FK YNF+A+G   + GHLHPLLKVR Q + IFL+MGF EMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL +P+   +LP DYV+RVKR H             WK EEA KNLLRTHTTA S+R L  LA+ KPF P KYFS
Sbjct:  187 KQEAELSPEMISSGSWRDRPFKPYNFSARGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYTWKLEEARKNLLRTHTTAASARALYRLAQKKPFTPAKYFS 352          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_MOUSE (Phenylalanyl-tRNA synthetase alpha chain OS=Mus musculus GN=Farsa PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.791e-53
Identity = 99/166 (59.64%), Postives = 117/166 (70.48%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAE-KPFAPKKYFS 518
            K   +L+ E +  G W++  FK YNF+A+G   + GHLHPLLKVR Q + IFL+MGF EMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL +P+   +LP  YV+RVKR H             WK EEA KNLLRTHTTA S+R L  LA+ KPF P KYFS
Sbjct:  187 KQEAELSPEMISSGSWRDRPFKPYNFSARGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMGYVQRVKRTHSQGGYGSQGYKYTWKLEEARKNLLRTHTTAASARALYQLAQKKPFTPAKYFS 352          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_PONAB (Phenylalanyl-tRNA synthetase alpha chain OS=Pongo abelii GN=FARSA PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.646e-53
Identity = 99/166 (59.64%), Postives = 117/166 (70.48%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAE-KPFAPKKYFS 518
            K  T+L+ E +  G W++  FK YNF A G   + GHLHPLLKVR Q + IFL+MGF EMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL +P+   +LP DYV+RVKR H             WK +EA KNLLRTHTT+ S+R L  LA+ KPF P KYFS
Sbjct:  187 KQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFS 352          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_HUMAN (Phenylalanyl-tRNA synthetase alpha chain OS=Homo sapiens GN=FARSA PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 3.646e-53
Identity = 99/166 (59.64%), Postives = 117/166 (70.48%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAE-KPFAPKKYFS 518
            K  T+L+ E +  G W++  FK YNF A G   + GHLHPLLKVR Q + IFL+MGF EMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL +P+   +LP DYV+RVKR H             WK +EA KNLLRTHTT+ S+R L  LA+ KPF P KYFS
Sbjct:  187 KQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFS 352          
The following BLAST results are available for this feature:
BLAST of CX293875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SYFA_ARATH5.586e-7881.98Probable phenylalanyl-tRNA synthetase alpha chain ... [more]
SYFAB_XENLA1.339e-5562.65Phenylalanyl-tRNA synthetase alpha chain B OS=Xeno... [more]
SYFA_DANRE1.748e-5561.45Phenylalanyl-tRNA synthetase alpha chain OS=Danio ... [more]
SYFAA_XENLA5.087e-5562.05Phenylalanyl-tRNA synthetase alpha chain A OS=Xeno... [more]
SYFA_DROME6.644e-5560.12Probable phenylalanyl-tRNA synthetase alpha chain ... [more]
SYFA_CHICK3.297e-5463.19Phenylalanyl-tRNA synthetase alpha chain OS=Gallus... [more]
SYFA_RAT4.307e-5460.24Phenylalanyl-tRNA synthetase alpha chain OS=Rattus... [more]
SYFA_MOUSE2.791e-5359.64Phenylalanyl-tRNA synthetase alpha chain OS=Mus mu... [more]
SYFA_PONAB3.646e-5359.64Phenylalanyl-tRNA synthetase alpha chain OS=Pongo ... [more]
SYFA_HUMAN3.646e-5359.64Phenylalanyl-tRNA synthetase alpha chain OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC05001H11SK FlavSen1 Citrus clementina cDNA clone C05001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293875 ID=CX293875; Name=CX293875; organism=Citrus clementina; type=EST; length=518bp
CTAATTATGCTCCCAAAAGGAAGAAAGTTGCTACAGATTTGACTCGAGAG
AACCTTCAGAAGGGTGATTGGAAGGAATTGGAGTTCAAAGAGTACAACTT
CAATGCTAAAGGACAGCCTGCGGAAGGTGGCCATCTTCACCCACTGCTCA
AGGTGCGGAAGCAATTGAAGGACATATTTCTCCAGATGGGTTTTGAGGAG
ATGCCGACAAACAATTTTGTTGAAAGCAGCTTCTGGAACTTTGATGCATT
GTTCCAGCCACAACAACACCCTGCCCGTGATTCTCATGATACCTTCTTTC
TGGAAGAACCTTCCACTACAAGGGAACTACCAGAAGATTATGTTGAGCGG
GTGAAGCGTGTGCACGAGTCTGGTGGTTATGGGTCCAGAGGATATGGATA
TGAGTGGAAAAGAGAGGAAGCAAACAAAAACCTTCTGCGAACTCATACAA
CTGCTGTCTCTTCCAGGATGCTTAAGGCGCTAGCTGAGAAACCTTTTGCC
CCAAAAAAGTATTTCTCC
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