CX293920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 2.544e-73 Identity = 131/151 (86.75%), Postives = 145/151 (96.03%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 455 EAK+AGAD+VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F+E+DLLINFLAA+KS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+K P+ Sbjct: 194 EAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 7.927e-67 Identity = 122/152 (80.26%), Postives = 136/152 (89.47%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 458 EAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN A IKS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN Sbjct: 200 EAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.040e-50 Identity = 94/146 (64.38%), Postives = 118/146 (80.82%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EA NAGADL G DL++ I G ++FD+LIA+PDMM +A LGK+LGPRGLMP+PK+GTVT+++ AIEEFKKGK+EYRADK+GIVHI FGK +FS +DLL+N A +SI+ N+P G KG YWKS YICS+MGPSI+L+I E D Sbjct: 85 EAINAGADLAGSTDLVQDIMKGMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESIDKNRPAGVKGKYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 3.952e-50 Identity = 95/146 (65.07%), Postives = 117/146 (80.14%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EA AGADL G +DLI+ I G ++FD+LIA+PDMM +A LGK+LGPRGLMP+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DFS +DLL N A +SI+ N+P G KG YWKS YICS+MGPSI+L+I E D Sbjct: 85 EALAAGADLAGAEDLIQNIMKGDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNRPSGVKGRYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 2.562e-49 Identity = 90/149 (60.40%), Postives = 122/149 (81.88%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA NAGAD+VG ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++ AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I + DYKL Sbjct: 86 EASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49 Identity = 90/149 (60.40%), Postives = 123/149 (82.55%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA AGAD+VG ++LI++I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGKA FS +DLL+N A +SI+ N+P GAKG YW+S Y+ ++MGPSI+++I + + KL Sbjct: 85 EASAAGADVVGSEELIDEIQKGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49 Identity = 90/149 (60.40%), Postives = 121/149 (81.21%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA NAGAD+ G ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT +I AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I + DYKL Sbjct: 86 EASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 9.735e-49 Identity = 90/149 (60.40%), Postives = 119/149 (79.87%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA NAGAD+VG ++LIE+I G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++ AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++++ N+P GAKG YW++ Y+ SSMGPSI+++I + D KL Sbjct: 86 EANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 2.832e-48 Identity = 89/146 (60.96%), Postives = 115/146 (78.77%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EAK AGA+LVG ++L++ I GG M+FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVTT++ AI EFK GK+E+RAD++GIVH+ FGKA FS DDLL N + ++++ NKP GAKG YWKS YI S+MGPS+ ++ + D Sbjct: 85 EAKAAGAELVGDEELVDSIAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVDRNKPSGAKGRYWKSLYITSTMGPSVEVDFSALQD 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 6.310e-48 Identity = 90/148 (60.81%), Postives = 117/148 (79.05%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 446 +AK+AGADL G +DL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT++I AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L N +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I + DY+ Sbjct: 85 KAKSAGADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINALQDYQ 232 The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bpback to top |