CX293920

Overview
NameCX293920
Unique NameCX293920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 2.544e-73
Identity = 131/151 (86.75%), Postives = 145/151 (96.03%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 455
            EAK+AGAD+VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F+E+DLLINFLAA+KS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+K P+
Sbjct:  194 EAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 7.927e-67
Identity = 122/152 (80.26%), Postives = 136/152 (89.47%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 458
            EAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN  A IKS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN
Sbjct:  200 EAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.040e-50
Identity = 94/146 (64.38%), Postives = 118/146 (80.82%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EA NAGADL G  DL++ I  G ++FD+LIA+PDMM  +A LGK+LGPRGLMP+PK+GTVT+++  AIEEFKKGK+EYRADK+GIVHI FGK +FS +DLL+N  A  +SI+ N+P G KG YWKS YICS+MGPSI+L+I E  D
Sbjct:   85 EAINAGADLAGSTDLVQDIMKGMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESIDKNRPAGVKGKYWKSFYICSTMGPSIQLDISEFRD 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.952e-50
Identity = 95/146 (65.07%), Postives = 117/146 (80.14%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EA  AGADL G +DLI+ I  G ++FD+LIA+PDMM  +A LGK+LGPRGLMP+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DFS +DLL N  A  +SI+ N+P G KG YWKS YICS+MGPSI+L+I E  D
Sbjct:   85 EALAAGADLAGAEDLIQNIMKGDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNRPSGVKGRYWKSFYICSTMGPSIQLDISEFRD 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.562e-49
Identity = 90/149 (60.40%), Postives = 122/149 (81.88%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA NAGAD+VG ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I  + DYKL
Sbjct:   86 EASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49
Identity = 90/149 (60.40%), Postives = 123/149 (82.55%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA  AGAD+VG ++LI++I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGKA FS +DLL+N  A  +SI+ N+P GAKG YW+S Y+ ++MGPSI+++I  + + KL
Sbjct:   85 EASAAGADVVGSEELIDEIQKGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49
Identity = 90/149 (60.40%), Postives = 121/149 (81.21%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA NAGAD+ G ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT +I  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I  + DYKL
Sbjct:   86 EASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 9.735e-49
Identity = 90/149 (60.40%), Postives = 119/149 (79.87%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA NAGAD+VG ++LIE+I  G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++++ N+P GAKG YW++ Y+ SSMGPSI+++I  + D KL
Sbjct:   86 EANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.832e-48
Identity = 89/146 (60.96%), Postives = 115/146 (78.77%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EAK AGA+LVG ++L++ I GG M+FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVTT++  AI EFK GK+E+RAD++GIVH+ FGKA FS DDLL N  +  ++++ NKP GAKG YWKS YI S+MGPS+ ++   + D
Sbjct:   85 EAKAAGAELVGDEELVDSIAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVDRNKPSGAKGRYWKSLYITSTMGPSVEVDFSALQD 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.310e-48
Identity = 90/148 (60.81%), Postives = 117/148 (79.05%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 446
            +AK+AGADL G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT++I  AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I  + DY+
Sbjct:   85 KAKSAGADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINALQDYQ 232          
The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_ARATH2.544e-7386.7550S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_SPIOL7.927e-6780.2650S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_GUITH1.040e-5064.3850S ribosomal protein L1, chloroplastic OS=Guillar... [more]
RK1_RHDSA3.952e-5065.0750S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RL1_ANASP2.562e-4960.4050S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RL1_THEEB7.454e-4960.4050S ribosomal protein L1 OS=Thermosynechococcus el... [more]
RL1_ANAVT7.454e-4960.4050S ribosomal protein L1 OS=Anabaena variabilis (s... [more]
RL1_MICAN9.735e-4960.4050S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RL1_SYNR32.832e-4860.9650S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROM56.310e-4860.8150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionC05002E08SK FlavRip1 Citrus clementina cDNA clone C05002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bp
ATGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATT
GAACAAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACC
AGATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGG
GACTCATGCCAAATCCTAAAGCTGGTACTGTTACAACTAACATACCTCAG
GCCATAGAAGAATTCAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAAC
TGGGATTGTCCACATACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACC
TCCTCATAAACTTCCTTGCTGCTATTAAATCAATTGAAGCAAACAAGCCA
AAAGGGGCCAAAGGAGTGTACTGGAAAAGTGCTTACATTTGCTCATCAAT
GGGACCTTCCATTCGATTAAACATAAAAGAAATGCTCGATTACAAGCTTC
CATCAAATTTCTAAACGACATAACTAAATTTTGTAAATGATATCTTTAAC
TGTTCAGTCAGCCTCTTTGATACCCATGC
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