CX293964

Overview
NameCX293964
Unique NameCX293964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig528 contig Ccv1_Contig528:1..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_RAT (Sphingolipid delta(4)-desaturase DES1 OS=Rattus norvegicus GN=Degs1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.492e-31
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRKPSATKKSE 299
            ++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR P   +  E
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPLVRKIASEYYDNLPHYNSWIRVLYDFVMDDTISPYSRMKRPPKGNEIQE 323          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_MICFO (Sphingolipid delta(4)-desaturase DES1 OS=Microtus fortis GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.544e-31
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRKPSATK 290
            ++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR P  ++
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPLVRKIAAEYYDKLPQYNSWIKVLYDFVMDDTISPYSRMKRPPKGSE 320          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_XENTR (Sphingolipid delta(4)-desaturase DES1 OS=Xenopus tropicalis GN=degs1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.323e-31
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRKPSATKKSE 299
            ++GHFI+EHY+F    ETYSYYGPLN+LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKRK     K E
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNYLTFNVGYHNEHHDFPSVPGKNLPLVRKIAAEYYDPLPKYSSWVKVLYDFVMDDTLSPYSRMKRKLKGDLKLE 323          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_PONAB (Sphingolipid delta(4)-desaturase DES1 OS=Pongo abelii GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKR 272
            ++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDFVMDDTISPYSRMKR 314          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_MOUSE (Sphingolipid delta(4)-desaturase DES1 OS=Mus musculus GN=Degs1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRKPSATK 290
            ++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP +PG  L  VR++A EYY  L  Y SW +V+Y ++ D T+ P+SRMKR P   +
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPMVRKIASEYYDDLPHYNSWIKVLYDFVTDDTISPYSRMKRPPKGNE 320          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_HUMAN (Sphingolipid delta(4)-desaturase DES1 OS=Homo sapiens GN=DEGS1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKR 272
            ++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  VR++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDFVMDDTISPYSRMKR 314          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_CHICK (Sphingolipid delta(4)-desaturase DES1 OS=Gallus gallus GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRKPSATKKSE 299
            ++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  V+++A EYY  L  Y SW +V+Y ++MD T+ P+SRMKR+     K +
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVKKIAAEYYDNLPQYNSWIKVLYDFVMDDTISPYSRMKRQLKGEVKQD 323          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS1_BOVIN (Sphingolipid delta(4)-desaturase DES1 OS=Bos taurus GN=DEGS1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.267e-30
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKR 272
            ++GHFI+EHY+F    ETYSYYGPLN LT++VGYHNEHHDFP IPG  L  VR++A EYY  L  Y SW +V+Y ++ D T+ P+SRMKR
Sbjct:  225 ISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDFVTDDTISPYSRMKR 314          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS2_MOUSE (Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 OS=Mus musculus GN=Degs2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.307e-27
Identity = 51/96 (53.12%), Postives = 73/96 (76.04%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRKPSATK 290
            ++GHF++EHY+F    ETYSYYGPLN++T++VGYH EHHDFP IPG  L  VR++APEYY  L  + SW +V++ ++ + ++GP+SR+KRK    K
Sbjct:  225 ISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLPLVRKIAPEYYDHLPQHHSWVKVLWDFVFEDSMGPYSRVKRKCKLAK 320          
BLAST of CX293964 vs. ExPASy Swiss-Prot
Match: DEGS2_RAT (Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 OS=Rattus norvegicus GN=Degs2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRKPSATK 290
            ++GHF++EHY+F    ETYSYYGPLN++T++VGYH EHHDFP IPG  L  VR +APEYY  L  + SW +V++ ++ + ++GP+SR+KRK    K
Sbjct:  225 ISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHVEHHDFPSIPGCYLPLVRMIAPEYYDHLPQHHSWVKVLWDFVFEDSLGPYSRVKRKCKLAK 320          
The following BLAST results are available for this feature:
BLAST of CX293964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DEGS1_RAT1.492e-3157.58Sphingolipid delta(4)-desaturase DES1 OS=Rattus no... [more]
DEGS1_MICFO2.544e-3158.33Sphingolipid delta(4)-desaturase DES1 OS=Microtus ... [more]
DEGS1_XENTR3.323e-3158.59Sphingolipid delta(4)-desaturase DES1 OS=Xenopus t... [more]
DEGS1_PONAB1.263e-3062.22Sphingolipid delta(4)-desaturase DES1 OS=Pongo abe... [more]
DEGS1_MOUSE1.263e-3057.29Sphingolipid delta(4)-desaturase DES1 OS=Mus muscu... [more]
DEGS1_HUMAN1.263e-3062.22Sphingolipid delta(4)-desaturase DES1 OS=Homo sapi... [more]
DEGS1_CHICK1.263e-3056.57Sphingolipid delta(4)-desaturase DES1 OS=Gallus ga... [more]
DEGS1_BOVIN6.267e-3061.11Sphingolipid delta(4)-desaturase DES1 OS=Bos tauru... [more]
DEGS2_MOUSE1.307e-2753.13Sphingolipid delta(4)-desaturase/C4-hydroxylase DE... [more]
DEGS2_RAT4.966e-2753.13Sphingolipid delta(4)-desaturase/C4-hydroxylase DE... [more]

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Properties
Property NameValue
Genbank descriptionC05004B07SK FlavRip1 Citrus clementina cDNA clone C05004B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293964 ID=CX293964; Name=CX293964; organism=Citrus clementina; type=EST; length=544bp
CCATGGCTGGTCACTTCATTTCAGAACATTATGTCTTCAACCCTGACCAG
GAGACATATTCTTACTATGGCCCCCTCAATTTTCTAACGTGGCATGTGGG
ATACCACAATGAGCACCATGATTTCCCAAGAATTCCTGGAAACAAGCTCC
ACAAGGTCAGGGAGGTTGCACCTGAGTATTATCAGGGTTTAGCATCTTAT
AAATCTTGGAGCCAGGTTATATACATGTATATTATGGATGGGACAGTCGG
CCCCTTTAGCCGAATGAAGAGAAAGCCTTCTGCAACAAAGAAATCCGAAT
AGATGCTCCCATCTCTACTTATTGGTTCAATTCCTTCTCCTCCAACCTTT
AGTTCAAAATGAGTTGCCACAGTAATTATCATTTTTATTTTTTGGTTCCT
ATTATATGTAACATTCTTTGAGGAATTAGAAATTACGTACTCTAGTTTTA
GACTGAAGGGATGAGTCAGTTTTCATTACTTTTAAACTGTTCTTTCTATA
TGTTATGTAGCAGAATTTTGGCTTCGTGTTGCCGTTTGTATCGT
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