CX294026

Overview
NameCX294026
Unique NameCX294026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:84..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.378e-42
Identity = 86/162 (53.09%), Postives = 109/162 (67.28%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV T   E TS +PPEKLFK F+L  D L+PKV P  VK  E++ GDGG G+IKK  F EG+ + Y KHRVD +DK+N  Y+YT I  EGDA    I++++Y+ K+V +PDGGS       ++ K   EIKEEQVKAG EK  G+FK +EAY LANP  Y+
Sbjct:    1 MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGIDKDNLSYSYTLI--EGDALSDVIENIAYDIKLVASPDGGSIVKTTSHYHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDAYN 160          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.477e-40
Identity = 80/162 (49.38%), Postives = 108/162 (66.67%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV T  +E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ GDGGPG+IKK  F EG+ + Y KH++D++DKEN  Y+YT I  EGDA   T++ +SYETK+V +P GGS       ++ K   EIKEE VKAG EK   +FK +E Y   +P  Y+
Sbjct:    1 MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLI--EGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 160          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.132e-37
Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV T   E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ GDGGPG+IKK  F EG+ + Y KH++D++D+ N  Y YT I  EGDA   TI+ VSYETK+V +   GS    +  ++ K   EIKEE VKAG EK  G+FK +E+Y   +P  Y+
Sbjct:    1 MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSVDEANYSYAYTLI--EGDALTDTIEKVSYETKLVAS-GSGSIIKSISHYHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDAYN 159          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: MAL11_MALDO (Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTV--VIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV T   E TS +PP +LFK FVL  D L+PK+ PQ +K  E++ G+GGPG+IKK  F EG+ + Y KHR+D++D+ +  Y+YT I  EGDA   TI+ +SYETK+V     GS ST+  +  ++ K   EIKEE VK G EK  G+FK +E+Y   +P  Y+
Sbjct:    1 MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFGEGSQYGYVKHRIDSIDEASYSYSYTLI--EGDALTDTIEKISYETKLVAC---GSGSTIKSISHYHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDAYN 159          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: PYRC1_PYRCO (Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.156e-35
Identity = 78/164 (47.56%), Postives = 108/164 (65.85%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTV--VIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MG+ T   E TS +PP +LFK FVL  D L+PK+ PQ +K+ E++ G+GGPG+IKK  F EG+ + Y KHRVD++D+ +  Y YT I  EGDA   TI+ +SYE K+V +   GS ST+  +  ++ K   EIKEE VKAG EK  G+FK +E+Y   +P  Y+
Sbjct:    1 MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFGEGSQYGYVKHRVDSIDEASYSYAYTLI--EGDALTDTIEKISYEAKLVAS---GSGSTIKSISHYHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDAYN 159          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: BEV1G_BETVE (Major pollen allergen Bet v 1-G OS=Betula verrucosa GN=BETV1G PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.058e-34
Identity = 76/164 (46.34%), Postives = 103/164 (62.80%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV    +E TS +P  +LFK F+L  D L+PKV PQ + +VE I G+GGPG+IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGG    +  K++ K   E+K EQVKA  E  + + +A+E+Y LA+   Y+
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: BEV1D_BETVE (Major pollen allergen Bet v 1-D/H OS=Betula verrucosa GN=BETV1D PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 76/164 (46.34%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV     E TS +P  +LFK F+L  D L+PKV PQ + +VE I G+GGPG+IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGG    +  K++ K   E+K EQVKA  E  + + +A+E+Y LA+   Y+
Sbjct:    1 MGVFNYEIETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: BEV1L_BETVE (Major pollen allergen Bet v 1-L OS=Betula verrucosa GN=BETV1L PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.496e-33
Identity = 75/164 (45.73%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV     E TS +P  ++FK F+L  D L+PKV PQ + +VE I G+GGPG+IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGG    +  K++ K   E+K EQVKA  E  + + +A+E+Y LA+   Y+
Sbjct:    1 MGVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: BEV1A_BETVE (Major pollen allergen Bet v 1-A OS=Betula verrucosa GN=BETVIA PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.496e-33
Identity = 76/164 (46.34%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV     E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGPG+IKK +F EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +S E K+V TPDGGS   +  K++ K   E+K EQVKA  E  + + +A+E+Y LA+   Y+
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD----TLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX294026 vs. ExPASy Swiss-Prot
Match: BEV1C_BETVE (Major pollen allergen Bet v 1-C OS=Betula verrucosa GN=BETV1C PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.308e-32
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 1
Query:   61 MGVLTLNAEETSTLPPEKLFKLFVLHFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYETKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKAGLEKEKGIFKALEAYALANPMPYS 546
            MGV    +E TS +P  +LFK F+L  DTL+PKV PQ + +VE I G+GGPG+IKK  F EG+ +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS   +  K++ K   E+K E +KA  EK + + +A+E+Y LA+   Y+
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDQEMKAEHMKAIKEKGEALLRAVESYLLAHSDAYN 160          
The following BLAST results are available for this feature:
BLAST of CX294026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PRU1_PRUAR2.378e-4253.09Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
PRU1_PRUAV6.477e-4049.38Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
MAL12_MALDO5.132e-3748.77Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
MAL11_MALDO5.674e-3647.56Major allergen Mal d 1 OS=Malus domestica GN=MALD1... [more]
PYRC1_PYRCO2.156e-3547.56Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 ... [more]
BEV1G_BETVE9.058e-3446.34Major pollen allergen Bet v 1-G OS=Betula verrucos... [more]
BEV1D_BETVE2.636e-3346.34Major pollen allergen Bet v 1-D/H OS=Betula verruc... [more]
BEV1L_BETVE4.496e-3345.73Major pollen allergen Bet v 1-L OS=Betula verrucos... [more]
BEV1A_BETVE4.496e-3346.34Major pollen allergen Bet v 1-A OS=Betula verrucos... [more]
BEV1C_BETVE1.308e-3245.06Major pollen allergen Bet v 1-C OS=Betula verrucos... [more]

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Properties
Property NameValue
Genbank descriptionC05005A02SK FlavRip1 Citrus clementina cDNA clone C05005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294026 ID=CX294026; Name=CX294026; organism=Citrus clementina; type=EST; length=602bp
TCCCAATTTCAGTTGATCGATAGTTTTCATATTCTTTCTTTGTTTAACTC
TTAGACAATCATGGGTGTTCTCACGTTGAATGCAGAGGAAACAAGCACTC
TCCCCCCTGAAAAGTTGTTCAAACTTTTTGTCCTTCATTTCGACACCCTT
CTGCCCAAAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGG
GGATGGAGGCCCTGGAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTG
ATTGGAAGTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAG
ATATACAATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTAC
TATTGATCATGTTTCTTATGAGACTAAGGTTGTGGGCACCCCTGACGGAG
GAAGCAAGAGCACCGTTGTTATCAAGTTCTATCCCAAACCAGGTGCCGAG
ATTAAGGAAGAGCAGGTTAAGGCAGGCTTGGAAAAGGAGAAGGGAATTTT
TAAGGCTCTGGAAGCCTATGCCTTGGCAAACCCGATGCCGTATAGCTCTA
CATCAACCTTCACCGATTGCGTCGCCTTGTTGCACATTATGATATATGTT
AT
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