CX294035

Overview
NameCX294035
Unique NameCX294035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294035_ssr171 microsatellite CX294035_ssr171:171..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294035 vs. ExPASy Swiss-Prot
Match: PCKA_CUCSA (Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.301e-18
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 VKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGK 138
            +KYEKGSFITS+GALATLSGAKTGRSP DKRVVKD+TTE+ELWWGK
Sbjct:  164 IKYEKGSFITSTGALATLSGAKTGRSPIDKRVVKDDTTEKELWWGK 209          
BLAST of CX294035 vs. ExPASy Swiss-Prot
Match: PCKA_MAIZE (Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 VKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGK 138
            +KYEKGSFITS+GALATLSGAKTGRSPRDKRVVKDE T ++LWWGK
Sbjct:  161 IKYEKGSFITSTGALATLSGAKTGRSPRDKRVVKDEVTAQDLWWGK 206          
BLAST of CX294035 vs. ExPASy Swiss-Prot
Match: PCKA_ARATH (Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 VKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGK 138
            +KYEKGSFITS+GALATLSGAKTGR+PRDKRVV+D TTE ELWWGK
Sbjct:  165 IKYEKGSFITSNGALATLSGAKTGRAPRDKRVVRDATTEDELWWGK 210          
BLAST of CX294035 vs. ExPASy Swiss-Prot
Match: PCKA2_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Urochloa panicoides GN=PCK2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1
Query:   10 EKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGK 138
            +K SFITS+GALATLSGAKTGRSPRDKRVVKDETT +ELWWGK
Sbjct:  123 KKSSFITSTGALATLSGAKTGRSPRDKRVVKDETTSQELWWGK 165          
BLAST of CX294035 vs. ExPASy Swiss-Prot
Match: PCKA1_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Urochloa panicoides GN=PCK1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1
Query:   10 EKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWGK 138
            +K SFITS+GALATLSGAKTGRSPRDKRVVKD+TT +ELWWGK
Sbjct:  121 KKSSFITSTGALATLSGAKTGRSPRDKRVVKDDTTAQELWWGK 163          
BLAST of CX294035 vs. ExPASy Swiss-Prot
Match: PCKA_EMENI (Phosphoenolpyruvate carboxykinase [ATP] OS=Emericella nidulans GN=acuF PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    7 YEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTERELWWG 135
            YE G+ ITSSGAL   SGAKTGRSP DKR+VK+E++E+E+WWG
Sbjct:   58 YETGTAITSSGALTAYSGAKTGRSPSDKRIVKEESSEKEVWWG 100          
The following BLAST results are available for this feature:
BLAST of CX294035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PCKA_CUCSA7.301e-1889.13Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis... [more]
PCKA_MAIZE2.124e-1786.96Phosphoenolpyruvate carboxykinase [ATP] OS=Zea may... [more]
PCKA_ARATH2.774e-1786.96Phosphoenolpyruvate carboxykinase [ATP] OS=Arabido... [more]
PCKA2_UROPA1.522e-1588.37Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Uroch... [more]
PCKA1_UROPA4.429e-1586.05Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Uroch... [more]
PCKA_EMENI7.819e-1269.77Phosphoenolpyruvate carboxykinase [ATP] OS=Emerice... [more]
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Properties
Property NameValue
Genbank descriptionC05005B03SK FlavRip1 Citrus clementina cDNA clone C05005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294035 ID=CX294035; Name=CX294035; organism=Citrus clementina; type=EST; length=486bp
GTTAAGTACGAGAAGGGATCCTTTATTACGTCATCTGGAGCTTTAGCGAC
GCTATCAGGTGCAAAGACGGGACGCTCCCCGAGAGACAAGCGGGTGGTTA
AGGACGAGACCACCGAACGCGAGCTCTGGTGGGGAAAGTAAGTTAATTCT
TTATTATTTTATCGCTTCTATTCTCTTCTCTTCTCTTCCAATATAAGTAA
ACTTTTTTGTTTATTTATTGATAAATAACTCATTTCCTGTTTTGTTTTGA
TTAACGTTTGACATGTTCTACGTTAATTGTATGCATATTATTTATACATA
GGGGCTCACCCAATATTGAAATGGACGAGCGCACTTTCTTAGAGAACAGA
GAACGGGCCGTTGATGACTTAAACTCATTGGATAAGGTAATTTATTTTCT
GACGAGTTTCGGACTTTGCAACCTATATAATAAAATATTTCCATACGGTA
ATATTAACCGTTTGTTTGCAAGCTTCCAAATTTTCC
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