CX294041

Overview
NameCX294041
Unique NameCX294041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14837 contig Ccv1_Contig14837:771..1283. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: 6OMT_COPJA ((RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22
Identity = 47/102 (46.08%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   24 VFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKEDDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGFLRHNIINLPAVPAIIEAYP 329
            + MK ILHDWDD+ C++ILK C++A+P K GK+++V+IV+       +       DL M  +T GGKERTE+EWK+++ D G+  H I  + AV ++IEAYP
Sbjct:  246 IMMKCILHDWDDKECIEILKRCKEAVPVKGGKVIIVDIVLNVQSEHPYTKMRLTLDLDMMLNT-GGKERTEEEWKKLIHDAGYKGHKITQITAVQSVIEAYP 346          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: 4OMT_COPJA (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.289e-18
Identity = 38/102 (37.25%), Postives = 68/102 (66.67%), Query Frame = 3
Query:   24 VFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKEDDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGFLRHNIINLPAVPAIIEAYP 329
            + +K ILHDW+D+  +KILK CR A+P+  GK+++V++ + E+ +     T  + D+ M  +T GGKERT++ W++I++  GF    I ++ A+ ++IE +P
Sbjct:  250 IILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEESDHELSSTRLILDIDMLVNT-GGKERTKEVWEKIVKSAGFSGCKIRHIAAIQSVIEVFP 350          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   15 GTRVFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGFLRHN 284
            G  +FMKWI HDW D+ CVK LKNC  A+P+  GK++L E V+ E  D  +        D+ M AH  GGKERTEKE++ + +  GF + N
Sbjct:  257 GDAIFMKWICHDWSDEHCVKFLKNCYDALPQ-NGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFN 346          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: COMT1_ZINEL (Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   15 GTRVFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGFLRHN 284
            G  +FMKWILHDW D  C+++LKNC K++PE  GK+++ E ++ E  D           D+ M AH  GGKERTEKE++ + +  GF   N
Sbjct:  250 GDAIFMKWILHDWSDAHCLQVLKNCYKSLPE-NGKVIVAECILPEAPDTTPATQNVIHIDVIMLAHNPGGKERTEKEFEALAKGAGFKGFN 339          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   15 GTRVFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGF 272
            G  +FMKWI HDW D  C+K LKNC +A+PE  GK++L E ++ E  D+ +        D+ M AH  GGKERTEKE++ + +  GF
Sbjct:  259 GDAIFMKWICHDWSDAHCLKFLKNCHEALPE-NGKVILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGF 344          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: COMT2_OCIBA (Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.507e-16
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   15 GTRVFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGFLRHN 284
            G  +FMKWI HDW D  CVK LK C +A+PE  GK++L E V+ E  D  +        D+ M AH  GGKERTEKE++ + +  GF + N
Sbjct:  257 GDAIFMKWICHDWSDAHCVKFLKKCYEALPE-NGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQVLAKASGFKQFN 346          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: OMT1_ARATH (Quercetin 3-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.886e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   15 GTRVFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGF 272
            G  +FMKWI HDW D+ CVK LKNC +++PE  GK++L E ++ E  D+ +        D  M AH  GGKERTEKE++ + +  GF
Sbjct:  257 GDAIFMKWICHDWSDEHCVKFLKNCYESLPE-DGKVILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGF 342          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.688e-16
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   15 GTRVFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGF 272
            G  +FMKWI HDW D  C K+LKNC +A+P+  GK++L E V+ E  D  +        D+ M AH  GGKERTEKE++ + +  GF
Sbjct:  246 GDAIFMKWICHDWSDDHCRKLLKNCYQALPD-NGKVILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGF 331          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: ZRP4_MAIZE (O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3
Query:   24 VFMKWILHDWDDQACVKILKNCRKAIP--EKTGKLVLVEIVVKEDDNDV-FGDTAYLFDL-CMFAHTRGGKERTEKEWKQILEDGGFLRHNIINLPAVPAIIEAYP 329
            V +K +LHDWD   CVKILKNC+KAIP  E  GK++++ +VV    +D+   +   +FD+  MF +   G ER E+EW +I  + G+  + II +  V +IIE YP
Sbjct:  262 VLLKSVLHDWDHDDCVKILKNCKKAIPPREAGGKVIIINMVVGAGPSDMKHKEMQAIFDVYIMFIN---GMERDEQEWSKIFSEAGYSDYRIIPVLGVRSIIEVYP 364          
BLAST of CX294041 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   15 GTRVFMKWILHDWDDQACVKILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRGGKERTEKEWKQILEDGGF 272
            G  + MKWILHDW D+ C ++LKNC  A+PE  GK+V+VE V+ E  D        +  D+ M AH  GGKER E+E++++    GF
Sbjct:  264 GDAILMKWILHDWSDEHCARLLKNCYDALPEH-GKVVVVECVLPESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGF 349          
The following BLAST results are available for this feature:
BLAST of CX294041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
6OMT_COPJA1.447e-2246.08(RS)-norcoclaurine 6-O-methyltransferase OS=Coptis... [more]
4OMT_COPJA6.289e-1837.253'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran... [more]
COMT1_OCIBA1.549e-1646.15Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
COMT1_ZINEL3.451e-1643.96Caffeic acid 3-O-methyltransferase OS=Zinnia elega... [more]
COMT1_CATRO3.451e-1645.98Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
COMT2_OCIBA4.507e-1646.15Caffeic acid 3-O-methyltransferase 2 OS=Ocimum bas... [more]
OMT1_ARATH5.886e-1645.98Quercetin 3-O-methyltransferase 1 OS=Arabidopsis t... [more]
COMT1_COFCA7.688e-1645.98Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]
ZRP4_MAIZE3.815e-1542.45O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 ... [more]
OMT1_ORYSJ3.815e-1544.83Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC05005C01SK FlavRip1 Citrus clementina cDNA clone C05005C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294041 ID=CX294041; Name=CX294041; organism=Citrus clementina; type=EST; length=513bp
CTCGTGCCGAATTCGGCACGAGGGTTTTTATGAAGTGGATATTGCATGAT
TGGGATGACCAAGCCTGTGTCAAGATTCTGAAAAACTGCCGAAAAGCAAT
TCCGGAGAAAACTGGAAAGCTTGTGTTAGTGGAAATCGTTGTAAAAGAAG
ATGATAACGACGTATTTGGCGACACGGCCTACTTATTTGATCTATGTATG
TTTGCTCACACAAGGGGTGGGAAGGAAAGGACTGAAAAAGAATGGAAGCA
AATATTGGAAGATGGAGGATTCCTCCGCCATAACATCATCAACCTACCGG
CTGTACCTGCCATTATTGAGGCCTATCCGCAGTGACATTAATTTGAAGCT
CAAATAAAATTACAAGTTTCACTCCCACCGAATACCAACTCTTCCCCTCC
CCCCCCCAAAAAAAAGCATAAAGTGCGTTTACGGCTAGCTTAATTAATTT
CTATTTGCTCTTGATTAAAAATAAAGTTCTGAAGTTTCACTCTGAACCGA
TCGCAGCATCATC
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