CX294054

Overview
NameCX294054
Unique NameCX294054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14035 contig Ccv1_Contig14035:1389..1827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX294054 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.815e-13
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:   89 SITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDLEFME 301
            S+ + SSPRF +YDNDFGWG+P+AVR+G +N   GK+  F G E  G +D+   L P+ +  L  D+EF+E
Sbjct:  371 SVIVSSSPRFEVYDNDFGWGKPIAVRAGPSNSISGKLVFFRGIE-EGCIDVHAFLLPDVLVKLLADVEFLE 440
[Close]
BLAST of CX294054 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:   38 DWESNPRLFPLGNFDGASITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDLEFM 298
            +WE +P++F   +     + +GSSPRF +Y+ DFG+G+P  VRSG  N+F+G +  + G+ G  S+D+E+ L    M  L    EF+
Sbjct:  362 EWEKSPKIFQFKDAGVNCVAVGSSPRFRVYEVDFGFGKPETVRSGSNNRFNGMMYLYQGKAGGISIDVEITLEASVMEKLVKSKEFL 448
The following BLAST results are available for this feature:
BLAST of CX294054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3028_ARATH1.815e-1347.89Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
DCR_ARATH2.371e-1337.93BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC05005D06SK FlavRip1 Citrus clementina cDNA clone C05005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294054 ID=CX294054; Name=CX294054; organism=Citrus clementina; type=EST; length=439bp
GCTGCAGGAATCGGCACGAGGGCGACGCGGTGTAGCGGACTGGGAAAGTA
ACCCGAGGCTGTTTCCGCTGGGGAACTTTGACGGTGCATCAATCACGATG
GGCAGCTCGCCGAGATTCCCAATGTATGATAATGATTTTGGGTGGGGCCG
GCCGTTGGCCGTGAGGAGCGGTAGGGCCAATAAGTTTGACGGGAAGATCT
CAGCCTTTCCTGGGAGGGAAGGAAACGGGAGCGTTGATCTTGAGGTTGTG
TTGGCTCCCGAGACTATGGCGGGTCTTGAGAATGACTTGGAGTTCATGGA
GTACGTGTCGTGATGTGATTGAATGTCATTCCTACCACCAAGGCTTGCGT
GTAATTTTAAGCGATTTTTAATCAAAAGCTTGATATTTTTCAAAAAAAAA
AAAAAAAAAACTCGGGGGGGGCCCCGGTCCCCATTTCCC
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