CX294060

Overview
NameCX294060
Unique NameCX294060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15509 contig Ccv1_Contig15509:96..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294060 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.157e-39
Identity = 71/149 (47.65%), Postives = 91/149 (61.07%), Query Frame = 2
Query:    2 GICRIGGCDNFFHCNKCTCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFQTRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 448
            GICRIG  ++FFHC KC  C +M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:  106 GICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          
BLAST of CX294060 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.071e-38
Identity = 70/149 (46.98%), Postives = 89/149 (59.73%), Query Frame = 2
Query:    2 GICRIGGCDNFFHCNKCTCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFQTRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 448
            GICRIG  ++FFHC KC  C +  L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:  106 GICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          
BLAST of CX294060 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 2
Query:    2 GICRIGGC--DNFFHCNKCTCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFQTRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 433
            GICRIG    D++FHC  C  C  + + N+H C+E +   +CP+C EY+F +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC    + ++H L  KC +C SYNT
Sbjct:  230 GICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          
The following BLAST results are available for this feature:
BLAST of CX294060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN2.157e-3947.65RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE1.071e-3846.98RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO1.713e-2839.04Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05005E04SK FlavRip1 Citrus clementina cDNA clone C05005E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294060 ID=CX294060; Name=CX294060; organism=Citrus clementina; type=EST; length=503bp
TGGAATATGCAGGATTGGTGGATGTGATAATTTCTTCCATTGCAACAAGT
GTACATGCTGCTACTCAATGCTTTTGAAGAACAGCCACCCATGTGTAGAA
GGTGCAATGCATCATGACTGCCCTGTCTGCTGTGAGTATTTATTCCAGAC
AAGACAGGATGTAATTGTCTTGCCGTGTGGGCATACCATTCACAAAAATT
GCTTGAAGGAGATGCGGGAACATCATCAATATGCCTGTCCTATCTGCTCC
AAGTCAGTCTGTGACATGTCCAAAGTATGGGAGAAATATGACAGGGAGAT
AGCGGCTACTCCAATGCCAGAAGCTTACCTAAATAAAAAGGTTTGGATCC
TTTGCAATGACTGTGGTAAGACCTCTAATGTCCAGTTCCATGTGCTGGCT
CAGAAGTGCCCAAACTGCAAGTCCTACAACACTCGCTTGACCAGGGGCTG
AGCAAGTGGCACTATTGTTAGCAATGATGGTGATGGTGATGGGAACTCTC
TGT
back to top