CX294084

Overview
NameCX294084
Unique NameCX294084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294084_ssr1 microsatellite CX294084_ssr1:1..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14837 contig Ccv1_Contig14837:9..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: 4OMT_COPJA (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   45 REDVL--RGQAQVWQLMLAFADSMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPWHHLSQCVQEGGNAFKKAHGCEMWDF 494
            ++DVL  + QA VW+++  FADS+  + AVEL + DI+  +  P+ L  LAS +  S  DV+   +L RI+R LV+  +    +S DG ++  Y L  I+  L R+++ S+ PMIL    +    PWH +   + + G AF+KA G  +W++
Sbjct:    6 KDDVLDIKAQAHVWKIIYGFADSLVLRCAVELGIVDIIDNNNQPMALADLASKLPVS--DVNC-DNLYRILRYLVKMEILRVEKSDDGQKK--YALEPIATLLSRNAKRSMVPMILGMTQKDFMTPWHSMKDGLSDNGTAFEKAMGMTIWEY 152          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: CVMT1_OCIBA (Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.973e-18
Identity = 52/150 (34.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   48 EDVLRGQAQVWQLMLAFADSMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPWHHLSQCVQEGGNA--FKKAHGCEMWD 491
            E +L+ QA VW  M AFA+SM+ K A++L + DI+H H  P+TL QL   I  +        S  R+MR LV    F    S+  ++E  Y LT  S+ LL+ + +++AP++          PWH++S+  +   +A  F+ A+GC  W+
Sbjct:   13 EQLLQAQAHVWNHMYAFANSMSLKCAIQLGIPDILHKHDHPMTLSQLLKAIPINKEKSQ---SFQRLMRALVNSNFFIEENSN--NQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTFTNPWHYMSEWFKHENHATQFEAANGCTFWE 157          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: EOMT1_OCIBA (Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.483e-18
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   48 EDVLRGQAQVWQLMLAFADSMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPWHHLSQCV--QEGGNAFKKAHGCEMWD 491
            E +L+ Q  VW  M AFA+SM+ K A++L + DI+H HG P+TL QL   I  +           R+MR LV    F    +S+ ++E  Y LT  S  LL+++ +++ P++          PWHH+S+    ++    F+ A+GC  W+
Sbjct:   13 EQLLQAQVHVWNHMYAFANSMSLKCAIQLGIPDILHKHGRPMTLSQLLQSIPINKEKTQ---CFQRLMRALVNSNFFIEENNSN-NQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTFTNPWHHMSEWFTHEKHATQFEAANGCTFWE 158          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: 6OMT_COPJA ((RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 54/156 (34.62%), Postives = 88/156 (56.41%), Query Frame = 3
Query:   39 DVREDVLRGQAQVWQLMLAFADSMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPWHHLSQCVQ-EGGNAFKKAHGCEMWDFASQ 503
            +V++D L  QA++W  +  FA+S+  K AV+L LA+I+H  G+ +TL +L+S + S   +     +L R+MR LV   +F    S DG  E  YGL   +K+L++  +  +   IL    +   APWH+L   +  E G AF+KA G  +W + ++
Sbjct:    2 EVKKDNLSSQAKLWNFIYGFAESLVLKCAVQLDLANIIHNSGTSMTLSELSSRLPSQPVNE---DALYRVMRYLVHMKLF-TKASIDG--ELRYGLAPPAKYLVKGWDKCMVGSILAITDKDFMAPWHYLKDGLSGESGTAFEKALGTNIWGYMAE 151          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: OMT1_ARATH (Quercetin 3-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 48/149 (32.21%), Postives = 84/149 (56.38%), Query Frame = 3
Query:   66 QAQVWQLMLAFAD--SMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHR---SSDGSEETMYGLTQISKWLLRDSE-MSLAPMILFQNSQLLQAPWHHLSQCVQEGGNAFKKAHGCEMWDF 494
            +A ++ + LA A    MA KSA+EL L +IM  +GSP++  ++AS + +  P+  ++  L RI+R+L    V        S DG E  +YGL  + K+L ++ + +S+A + L    ++L   W+HL   + +GG  F KA+G   +++
Sbjct:   18 EAALFAMQLASASVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVM--LDRILRLLTSYSVLTCSNRKLSGDGVER-IYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAYGMSAFEY 163          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 45/143 (31.47%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   81 QLMLAFADSMA*KSAVELRLADIMHCHGSP--ITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSS--DGSEETMYGLTQISKWLLRDSE-MSLAPMILFQNSQLLQAPWHHLSQCVQEGGNAFKKAHGCEMWDF 494
            QL  A    M  KSA+EL L +++   G+   ++   LA+ + ++ PD H++  L RI+R+L    +      +  DG  E +YGL  + K+L ++ + +S+AP+ L    ++L   W+HLS  V +GG  F KA+G   +++
Sbjct:   23 QLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPTTNPDAHVM--LDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMNQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEY 163          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: ZRP4_MAIZE (O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.122e-12
Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = 3
Query:   48 EDVLRGQAQVWQLMLAFADSMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIP----SLTRIMRMLVRKGVFAAH---RSSDGSEETMYGLTQISKWLL--RDSEMSLAPMILFQNSQLLQAPWHHLSQCVQE---GGNAFKKAHGCEMWD 491
            + +L  Q ++W    AF  SMA KSA+ LR+AD +H HG   +L Q+ S        VH+ P    SL R+MR+L    VF        SD   E +Y LT +S+ L+  + S+++  P+        + +P+  L    Q        FK  HG  +W+
Sbjct:   11 QSLLDAQLELWHTTFAFMKSMALKSAIHLRIADAIHLHGGAASLSQILS-------KVHLHPSRVSSLRRLMRVLTTTNVFGTQPLGGGSDDDSEPVYTLTPVSRLLIGSQSSQLAQTPLAAMVLDPTIVSPFSELGAWFQHELPDPCIFKHTHGRGIWE 163          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.122e-12
Identity = 47/150 (31.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   66 QAQVWQLMLAFAD--SMA*KSAVELRLADIMHCHGSPITLP--QLASGINSSCPDVHIIPSLTRIMRMLVRKGV--FAAHRSSDGSEETMYGLTQISKWLLRDSE-MSLAPMILFQNSQLLQAPWHHLSQCVQEGGNAFKKAHGCEMWDF 494
            +A ++ + LA A    M  K+A+EL L +IM   G  + L    +AS + +  PD  ++  L R++R+L    +  ++    +DG  E +YGL  + K+L ++ E +S+AP+ L    ++L   W+HL   V EGG  F KA+G   +++
Sbjct:   18 EANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVM--LDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEY 165          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: 7OMT9_MEDSA (Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 48/149 (32.21%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   51 DVLRGQAQVWQLMLAFADSMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPWHHLSQCV-QEGGNAFKKAHGCEMWDF 494
            ++ + QA +++ + AF DSM+ K AV + + +I+H HG PI+L  L S +         I ++ R+MR L   G F         EE  Y LT  S+ L+R S++ LAPM+       L   +H L + + +E    F    G   WDF
Sbjct:   12 EIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVPSSK---IGNVRRLMRYLAHNGFFEIIT----KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDF 153          
BLAST of CX294084 vs. ExPASy Swiss-Prot
Match: 7OMT8_MEDSA (Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 48/149 (32.21%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   51 DVLRGQAQVWQLMLAFADSMA*KSAVELRLADIMHCHGSPITLPQLASGINSSCPDVHIIPSLTRIMRMLVRKGVFAAHRSSDGSEETMYGLTQISKWLLRDSEMSLAPMILFQNSQLLQAPWHHLSQCV-QEGGNAFKKAHGCEMWDF 494
            ++ + QA +++ + AF DSM+ K AVE+ + +I+  HG PI+L  L S +         I ++ R+MR L   G F         EE  Y LT  S+ L+R S++ LAPM+       L   +H L + + +E    F    G   WDF
Sbjct:   12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSK---IGNVRRLMRYLAHNGFFEIIT----KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDF 153          
The following BLAST results are available for this feature:
BLAST of CX294084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
4OMT_COPJA5.875e-1935.533'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran... [more]
CVMT1_OCIBA4.973e-1834.67Chavicol O-methyltransferase OS=Ocimum basilicum G... [more]
EOMT1_OCIBA8.483e-1833.33Eugenol O-methyltransferase OS=Ocimum basilicum GN... [more]
6OMT_COPJA2.729e-1634.62(RS)-norcoclaurine 6-O-methyltransferase OS=Coptis... [more]
OMT1_ARATH3.688e-1332.21Quercetin 3-O-methyltransferase 1 OS=Arabidopsis t... [more]
COMT1_OCIBA6.291e-1331.47Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
ZRP4_MAIZE3.122e-1231.25O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 ... [more]
COMT1_PRUDU3.122e-1231.33Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
7OMT9_MEDSA6.956e-1232.21Isoflavone-7-O-methyltransferase 9 OS=Medicago sat... [more]
7OMT8_MEDSA9.085e-1232.21Isoflavone-7-O-methyltransferase 8 OS=Medicago sat... [more]

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Properties
Property NameValue
Genbank descriptionC05005H03SK FlavRip1 Citrus clementina cDNA clone C05005H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294084 ID=CX294084; Name=CX294084; organism=Citrus clementina; type=EST; length=520bp
GAGAGAGAGAGAGAGAGAGAGAGAGAATGGAATCAGCTGACGTTCGCGAG
GACGTCCTAAGAGGGCAAGCCCAAGTTTGGCAACTCATGCTCGCCTTTGC
AGATTCCATGGCTTGAAAATCTGCCGTGGAGCTTCGCTTAGCCGATATTA
TGCACTGCCATGGCAGCCCAATCACTTTGCCCCAGTTAGCCTCAGGAATT
AACTCATCGTGTCCAGATGTTCACATAATTCCCTCCCTTACGCGCATCAT
GAGAATGCTTGTCCGGAAAGGAGTTTTCGCCGCACATCGTTCATCAGACG
GCAGTGAAGAGACGATGTACGGATTGACGCAAATATCAAAATGGTTACTA
CGTGACTCCGAGATGAGTCTTGCTCCGATGATACTTTTCCAAAACAGTCA
ACTGCTACAGGCACCGTGGCATCACCTTAGCCAATGTGTCCAAGAAGGTG
GTAATGCTTTCAAGAAGGCTCACGGCTGTGAAATGTGGGATTTCGCTTCA
CAAACTCTCATTCAACACTC
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