CX294088

Overview
NameCX294088
Unique NameCX294088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_CITSI (ATP synthase subunit alpha, chloroplastic OS=Citrus sinensis GN=atpA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 84/100 (84.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RFLLQEQ
Sbjct:  407 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLQEAIQEQKERFLLQEQ 506          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37
Identity = 81/100 (81.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+QAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTY+KTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQKERFLLQEQ 506          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_DAUCA (ATP synthase subunit alpha, chloroplastic OS=Daucus carota GN=atpA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 80/101 (79.21%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+Q+APL VEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ+
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLAVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLKEAIQEQMERFILQEQV 507          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_NICTO (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQTDRFILQEQ 506          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_NICSY (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_ATRBE (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 79/100 (79.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMKRFILQEQ 506          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_MANES (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.891e-37
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQL 303
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF++QEQ+
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETLLKEAIQEQKERFVIQEQV 507          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_CARPA (ATP synthase subunit alpha, chloroplastic OS=Carica papaya GN=atpA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.031e-36
Identity = 80/99 (80.81%), Postives = 82/99 (82.83%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 297
            TQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RFLLQE
Sbjct:  407 TQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETILKEAIQEQMERFLLQE 505          
BLAST of CX294088 vs. ExPASy Swiss-Prot
Match: ATPA_VITVI (ATP synthase subunit alpha, chloroplastic OS=Vitis vinifera GN=atpA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 80/100 (80.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    1 TQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 300
            TQNQLARGQRLRELLKQ+QAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFL ELR YLKTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  407 TQNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLAELRNYLKTNKPQFQEIISSTKTFTEEAETLLKETIQEQMERFLLQEQ 506          
The following BLAST results are available for this feature:
BLAST of CX294088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
ATPA_CITSI1.438e-3884.00ATP synthase subunit alpha, chloroplastic OS=Citru... [more]
ATPA_EUCGG2.712e-3781.00ATP synthase subunit alpha, chloroplastic OS=Eucal... [more]
ATPA_DAUCA3.542e-3779.21ATP synthase subunit alpha, chloroplastic OS=Daucu... [more]
ATPA_TOBAC6.042e-3779.00ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICTO6.042e-3779.00ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICSY6.042e-3779.00ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_ATRBE6.042e-3779.00ATP synthase subunit alpha, chloroplastic OS=Atrop... [more]
ATPA_MANES7.891e-3778.22ATP synthase subunit alpha, chloroplastic OS=Manih... [more]
ATPA_CARPA1.031e-3680.81ATP synthase subunit alpha, chloroplastic OS=Caric... [more]
ATPA_VITVI1.346e-3680.00ATP synthase subunit alpha, chloroplastic OS=Vitis... [more]

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Properties
Property NameValue
Genbank descriptionC05005H10SK FlavRip1 Citrus clementina cDNA clone C05005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294088 ID=CX294088; Name=CX294088; organism=Citrus clementina; type=EST; length=367bp
ACTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACA
GGCCCAAGCAGCCCCTCTCACGGTGGAAGAACAGATAATGACTATTTATA
CAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAA
TTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCA
AGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTT
TGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAA
TTATAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAATAT
AAAAAAAAAAAAAAAAA
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