CX294169

Overview
NameCX294169
Unique NameCX294169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15210 contig Ccv1_Contig15210:81..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.218e-48
Identity = 60/87 (68.97%), Postives = 73/87 (83.91%), Query Frame = 2
Query:  203 FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMT 463
            F  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKVS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT
Sbjct:   77 FDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMT 163          

HSP 2 Score: 81.2629 bits (199), Expect = 5.218e-48
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   10 KLLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQYF 204
            +++G I+F +WS+SFYPQ+ILNFRR+S  G+   F     LTKHSSYMIYNV L+FS  +Q+QYF
Sbjct:   14 EIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVML-NLTKHSSYMIYNVCLYFSPVIQKQYF 77          
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.819e-25
Identity = 33/88 (37.50%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  203 FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMT 463
            + KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T
Sbjct:   72 YDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFIT 157          

HSP 2 Score: 62.003 bits (149), Expect = 2.819e-25
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   13 LLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQYFSEVRP 219
            ++G I F  WS+SFYPQVILNFR+K+  G+   F    I T ++ Y ++N VL+F   V+ +Y+ +  P
Sbjct:   10 IIGWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNI-TGYACYSVFNSVLYFDKLVKNEYYDKYGP 77          
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 5.084e-20
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  233 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTL 466
            PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++  + + WL A V   VA     +WL  +  F+ I++ +TL
Sbjct:  200 PVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTL 278          

HSP 2 Score: 56.6102 bits (135), Expect = 5.084e-20
Identity = 27/64 (42.19%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   10 KLLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQY 201
            +++G I FVAWS+SFYPQVI+N+RRKS  G+   F     LT   +Y ++N+ L +   +++Q+
Sbjct:  128 QVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVAL-NLTGFVAYSVFNIGLLWVPYIKEQF 190          
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.455e-19
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  233 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTL 466
            PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  + + WL   V   VA     +WL  +  F+ I++I+TL
Sbjct:  200 PVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITL 278          

HSP 2 Score: 54.6842 bits (130), Expect = 1.455e-19
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   10 KLLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQY 201
            +++G I F+AWSVSFYPQVI N+RRKS  G+   F     LT   +Y ++N+ L +   +Q+++
Sbjct:  128 QVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLAL-NLTGFVAYSVFNIGLLWVPYIQEEF 190          
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.455e-19
Identity = 29/79 (36.71%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  233 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFV-ALPNHSWLWLINFFNAIQVIMTL 466
            PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ + + WL   +   + A+   +WL  +  F+ I++ +TL
Sbjct:  200 PVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTL 278          

HSP 2 Score: 56.6102 bits (135), Expect = 1.455e-19
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   10 KLLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQY 201
            +++G I FVAWSVSFYPQVI N+RRKS  G+   F     L    +Y ++N+ LF+  ++++Q+
Sbjct:  128 QVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVL-NLMGFVAYSVFNIGLFWVPSIKEQF 190          
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 3.280e-14
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   10 KLLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQYFSEVRPRS 225
            +++G   F AWS+SFYPQ+ LNF+RKS  G+   F     L    +Y I+N++++++S V+ +Y + V PRS
Sbjct:  130 QIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSL-NLVGFCAYAIFNLLMYYNSHVKNEY-NIVNPRS 199          

HSP 2 Score: 40.4318 bits (93), Expect = 3.280e-14
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 2
Query:  233 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVV 367
            PV  NDV F++HA L   IT+ Q   YER  Q VS   +A++ V+
Sbjct:  202 PVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALMIVL 246          
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 3.282e-14
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   13 LLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQYFSEVR 216
            + G + FVAWSVSFYPQ+  N+RRKS  G+   F    I+   + Y ++N  L+F   +Q +Y  EVR
Sbjct:  134 IFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIV-GFTLYSMFNCGLYFIEDLQNEY--EVR 198          

HSP 2 Score: 46.2098 bits (108), Expect = 3.282e-14
Identity = 27/81 (33.33%), Postives = 44/81 (54.32%), Query Frame = 2
Query:  233 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTL 466
            PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A  V     L   S   WL  + + + +++ +T+
Sbjct:  205 PVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITI 283          
BLAST of CX294169 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.455e-13
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   10 KLLGRISFVAWSVSFYPQVILNFRRKSCCGIELRFSCC*ILTKHSSYMIYNVVLFFSSTVQQQYFSEVRPRS 225
            +++G   F AWSVSFYPQ+ LNF+RKS  G+   F     L    +Y ++N++++++S V+  Y  E  PRS
Sbjct:  129 QIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSL-NLVGFGAYAMFNLLMYYNSHVKNIYSME-NPRS 198          

HSP 2 Score: 38.891 bits (89), Expect = 3.455e-13
Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 2
Query:  233 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVS-KISMAIVSVV 367
            PV  NDV F++HA L   +T+ Q   YER  Q++S K  + I+ +V
Sbjct:  201 PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLV 246          
The following BLAST results are available for this feature:
BLAST of CX294169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CTNS_ARATH5.218e-4868.97Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI2.819e-2537.50Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_HUMAN5.084e-2041.77Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_MOUSE1.455e-1941.77Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_BOVIN1.455e-1936.71Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_CAEEL3.280e-1440.28Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
CTNS_DROME3.282e-1442.65Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
CTNS_CAEBR3.455e-1340.28Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
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Properties
Property NameValue
Genbank descriptionC05013A02SK AbsAOv1 Citrus clementina cDNA clone C05013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294169 ID=CX294169; Name=CX294169; organism=Citrus clementina; type=EST; length=466bp
TAACGTACCAAGCTCCTCGGACGGATCTCATTCGTTGCGTGGTCCGTCAG
TTTCTACCCGCAGGTCATCTTAAACTTCCGTCGCAAAAGTTGTTGTGGGA
TTGAACTTCGATTTTCGTGTTGCTGAATTTTGACGAAGCATTCCTCCTAC
ATGATTTACAACGTCGTCCTCTTCTTTAGCTCCACCGTTCAGCAACAGTA
CTTTTCAGAAGTACGGCCGCGATCAGATGATTCCCGTGGCAGCAAATGAT
GTTGCGTTTTCAATGCATGCTGTTCTCTTGACAATAATTACCCTGTTCCA
AATTGCAATCTATGAACGTGGTGTTCAAAAGGTATCTAAGATTTCTATGG
CAATTGTCTCTGTTGTTTGGTTGGCTGCCGCAGTTTGTTTCTTCGTAGCA
TTGCCAAACCATTCTTGGCTTTGGCTCATCAACTTCTTTAACGCTATTCA
AGTTATTATGACACTC
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