CX294173

Overview
NameCX294173
Unique NameCX294173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294173 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 8.122e-44
Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query:    7 AFREKEFNSAVDCYSQFIDVGTMVLPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKRQRSGRGS 306
            +FREK+F +A+DCYSQFIDVGTMV PTV+ RRSLC+L+CDQPDAALRDAMQAQCVYPDW TAFYMQ+VALAKL+M+ DAADML EAA LEEKRQR GRGS
Sbjct:  413 SFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQRGGRGS 512          
BLAST of CX294173 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.066e-27
Identity = 57/93 (61.29%), Postives = 75/93 (80.65%), Query Frame = 1
Query:    7 AFREKEFNSAVDCYSQFIDVGTMVLPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 285
            AF E++F +A+ CYSQF++  ++V P+VYARRSL +L CD+P+ AL D M AQ V+PDW TAFY+Q+VALAKLDM+ D+AD LKEAA LE K+
Sbjct:  373 AFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
BLAST of CX294173 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.548e-23
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    7 AFREKEFNSAVDCYSQFIDVGTMVLPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 285
            AFR K+F  A++CYSQFI+VGTM  PTV+AR+SLC+LM D P  AL +AMQAQ + P W  A Y+QAVAL+ L    +A   LK+ A LE KR
Sbjct:  392 AFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKR 484          
The following BLAST results are available for this feature:
BLAST of CX294173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH8.122e-4482.00Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH1.066e-2761.29Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y5126_ARATH3.548e-2356.99Probable serine/threonine-protein kinase At5g41260... [more]
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Properties
Property NameValue
Genbank descriptionC05013A08SK AbsAOv1 Citrus clementina cDNA clone C05013A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294173 ID=CX294173; Name=CX294173; organism=Citrus clementina; type=EST; length=448bp
AATGTGGCATTCCGAGAGAAAGAATTTAATTCTGCCGTAGATTGCTATTC
TCAGTTTATAGACGTGGGAACCATGGTTTTACCAACTGTCTATGCACGGA
GAAGTCTTTGTCATTTAATGTGTGACCAGCCAGATGCTGCACTTAGAGAT
GCAATGCAAGCACAATGTGTTTATCCCGACTGGTCCACAGCATTTTACAT
GCAGGCTGTTGCCCTTGCGAAGTTGGACATGCACAAGGATGCAGCTGATA
TGTTAAAGGAGGCTGCCTCATTAGAAGAAAAAAGGCAACGGAGTGGGAGA
GGTTCTTGAGAAGCTGTAATATTCTTTTGTAGCCTGTGTTCAATCAATTG
TTGTGGTGGTTGTAAGAAAGCATTTGGGCTTTATGTAATTTGAAATTAGG
AATATGGTTTTCTTCCAAAATGTACCATAGAGGGAGGACAGACTTGTT
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