CX294176

Overview
NameCX294176
Unique NameCX294176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  WDDHW FWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  249 KDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  WDDHW FWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  249 KDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  WDDHW FWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:  248 KDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFK 283          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 2
Query:   35 GWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            GW+DHW FWVGPF+GA LAALYHQVVIRAIPFK
Sbjct:  255 GWNDHWIFWVGPFIGAALAALYHQVVIRAIPFK 287          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  WDDHW FWVGPF+GA LAALYH VVIRAIPFK
Sbjct:  248 KDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  W+DHW FWVGPFVGA LAA+YHQV+IRAIPFK
Sbjct:  251 KDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFK 286          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  WDDHW FWVGPF+GA LAALYH VVIRAIPFK
Sbjct:  248 KDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 2
Query:    2 RPHGRDLQQDRG--WDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            R  G  +  +RG  WDDHW FWVGPF+GA LAA+YHQVVIRAIPFK
Sbjct:  240 RSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFK 285          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  W+DHW FWVGPF+GA LAA+YHQV+IRAIPFK
Sbjct:  251 RDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 286          
BLAST of CX294176 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 2
Query:   26 QDRGWDDHWNFWVGPFVGAGLAALYHQVVIRAIPFK 133
            +D  WDDHW FWVGPF+GA LAALYH +VIRAIPFK
Sbjct:  248 KDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFK 283          
The following BLAST results are available for this feature:
BLAST of CX294176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIP15_ARATH6.030e-1380.56Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH6.030e-1380.56Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.029e-1280.56Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP2_PEA2.291e-1287.88Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP11_VICFA2.993e-1280.56Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ORYSJ2.993e-1277.78Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP11_ARATH2.993e-1280.56Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_ORYSJ3.908e-1269.57Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_MAIZE3.908e-1275.00Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP12_ARATH3.908e-1277.78Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionC05013A11SK AbsAOv1 Citrus clementina cDNA clone C05013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294176 ID=CX294176; Name=CX294176; organism=Citrus clementina; type=EST; length=400bp
TCGGCCACACGGCCGGGATCTGCAACAGGACCGCGGTTGGGATGACCACT
GGAACTTCTGGGTGGGACCATTCGTTGGAGCTGGACTCGCAGCTTTGTAC
CACCAAGTCGTGATCAGAGCCATTCCCTTCAAATGAAGCTGATCGCTTCA
TCAACGTTCGTGATTGCACCTGCATTTGTTTATGGCTGTTGCTGGTTTGC
TTATGTGTATTATAAAATATTAATTAGTCCTTTGTTCAAATCTGCTGGTG
CTGGACCTGGGCCTGCTTCTCTGTTTTCCTTCCTTAAAACGTTTTTTTTT
TTTTTAATTTTGAAAAAAGGTGTATAAAAATGACGGATGGCCCCATGGTT
AAATAGGTGGGCCCTGTCGCTTTGTACATTTGTTTGGCTATGGATTTGTG
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