CX294177

Overview
NameCX294177
Unique NameCX294177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294177 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.302e-23
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 2
Query:   41 SNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKS-QGSEQLTKEKLIAAFSCESSSIQP 322
            S  N  +   +P+VDIQA ++EVVVRV  PLDSHPASR+IQA +++ ++++E+KLS   D +FHTFVIKS  GS+ LTKEKLIAAF  E+SS QP
Sbjct:  459 SESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNGSDPLTKEKLIAAFYPETSSTQP 553          
BLAST of CX294177 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 46/107 (42.99%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   20 RDSSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCE-SSSIQPLSSVG 337
            R+   + SNP +   +   D+++Q + ++V VR++CPL+SHPASR+  AF+++++ V+ S L    D V HTFV+K   SE+LTKEKLI+A S E ++S+Q  +S G
Sbjct:  489 RERLGYSSNPPISLDS---DINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVK---SEELTKEKLISALSREQTNSVQSRTSSG 589          
BLAST of CX294177 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 2
Query:   56 ESQNRAP-DVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQG---SEQLTKEKLIAAFS 298
            ES    P +VD Q  HD+ VVR+SCPL++HP S+VIQ  ++ ++   +S ++   + V HTF ++ QG   +EQL K+KL+A+ S
Sbjct:  383 ESNQITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTLRPQGGCTAEQL-KDKLLASLS 466          
The following BLAST results are available for this feature:
BLAST of CX294177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AIB_ARATH3.302e-2358.95Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH013_ARATH4.177e-1842.99Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH003_ARATH6.459e-1142.35Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC05013B01SK AbsAOv1 Citrus clementina cDNA clone C05013B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294177 ID=CX294177; Name=CX294177; organism=Citrus clementina; type=EST; length=608bp
TACGGCCGGGGGCAACTCCAGAGACTCGTCTGCCTTTGAGTCGAATCCTA
ATGTGGAAAGTCAGAACCGAGCCCCTGATGTTGATATTCAAGCTGCCCAT
GATGAGGTGGTTGTAAGAGTGAGCTGTCCTCTTGATTCACATCCTGCATC
AAGAGTCATCCAAGCTTTTAAAGACGCACAAATCACAGTTGTGGAGTCAA
AACTTTCTACCGGAAATGATATGGTATTTCACACATTTGTAATCAAATCT
CAGGGATCGGAGCAGTTGACAAAAGAGAAGTTGATTGCAGCATTTTCCTG
CGAATCAAGCTCAATACAGCCATTATCATCAGTTGGGTAGCGGCAGTAGC
AGTAAGAATGGCATTTAACTTAGTGATAGCATAAAATGTAGAGAAGAACA
ATTCAAAAGTTTCTTCTTCGGTTTTGTTATACGGCAAAGGATTCTGAGTG
GAAACAGCAGGTCCAGTTAGAATTAGAAAATAACTACTTATTGACATTTA
GGGCAGCAATTTTTCTGTGAATGTTTATATTATACATATTTTGTCATAAG
GAAGTTTTTTGCAAGATGAATTAAATTTGTAAGTTTACCAACTCTATCAT
CGTTGGTT
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